A fixed-mesh method for incompressible flow-structure systems with finite solid deformations. - Hong Zhao; Jonathan B. Freund; Robert D. Moser (J. Comput. Phys., 2008)

An interface capturing method for the simulation of multi-phase compressible flows. - Ratnesh K. Shukla; Carlos Pantano; Jonathan B. Freund (J. Comput. Phys., 2010)

A spectral boundary integral method for flowing blood cells. - Hong Zhao; Amir H. G. Isfahani; Luke N. Olson; Jonathan B. Freund (J. Comput. Phys., 2010)

A diffuse interface model with immiscibility preservation. - Arpit Tiwari; Jonathan B. Freund; Carlos Pantano (J. Comput. Phys., 2013)

A Finite Element Based P3M Method for N-body Problems. - Natalie N. Beams; Luke N. Olson; Jonathan B. Freund (CoRR, 2015)

A practical discrete-adjoint method for high-fidelity compressible turbulence simulations. - Ramanathan Vishnampet; Daniel J. Bodony; Jonathan B. Freund (J. Comput. Phys., 2015)

A Finite Element Based P3M Method for N-Body Problems. - Natalie N. Beams; Luke N. Olson; Jonathan B. Freund (SIAM J. Sci. Comput., 2016)

Improving the memory access locality of hybrid MPI applications. - Matthias Diener; Sam White; Laxmikant V. Kalé; Michael T. Campbell; Daniel J. Bodony; Jonathan B. Freund (EuroMPI/USA, 2017)

An adaptive least-squares global sensitivity method and application to a plasma-coupled combustion prediction with parametric correlation. - Kunkun Tang; Luca Massa; Jonathan M. Wang; Jonathan B. Freund (J. Comput. Phys., 2018)

Adaptive sparse polynomial dimensional decomposition for derivative-based sensitivity. - Kunkun Tang; Jonathan M. Wang; Jonathan B. Freund (J. Comput. Phys., 2019)

Boundary-consistent B-spline filtering schemes and application to high-fidelity simulations of turbulence. - Yong Yi Bay; Daniel J. Bodony; Jonathan B. Freund (J. Comput. Phys., 2020)

Regular sensitivity computation avoiding chaotic effects in particle-in-cell plasma methods. - Seung Whan Chung; Stephen D. Bond; Eric C. Cyr; Jonathan B. Freund (J. Comput. Phys., 2020)

A computational model for nanosecond pulse laser-plasma interactions. - Alessandro Munafò; Andrea Alberti; Carlos Pantano; Jonathan B. Freund; Marco Panesi (J. Comput. Phys., 2020)

DPM: A deep learning PDE augmentation method with application to large-eddy simulation. - Justin A. Sirignano; Jonathan F. MacArt; Jonathan B. Freund (J. Comput. Phys., 2020)

Embedded training of neural-network sub-grid-scale turbulence models. - Jonathan F. MacArt; Justin A. Sirignano; Jonathan B. Freund (CoRR, 2021)

An optimization method for chaotic turbulent flow. - Seung Whan Chung; Jonathan B. Freund (J. Comput. Phys., 2022)

Soft Checksums to Flag Untrustworthy Machine Learning Surrogate Predictions and Application to Atomic Physics Simulations. - Casey Lauer; Robert C. Blake; Jonathan B. Freund (CoRR, 2024)

A TVD neural network closure and application to turbulent combustion. - Seung Won Suh; Jonathan F. MacArt; Luke N. Olson; Jonathan B. Freund (J. Comput. Phys., 2025)

Corrigendum to "A TVD neural network closure and application to turbulent combustion" [Journal of Computational Physics 523 (2025)/113638]. - Seung Won Suh; Jonathan F. MacArt; Luke N. Olson; Jonathan B. Freund (J. Comput. Phys., 2025)