OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy. - G. P. S. Raghava; Stephen M. J. Searle; Patrick C. Audley; Jonathan D. Barber; Geoffrey J. Barton (BMC Bioinform., 2003)

The Jpred 3 secondary structure prediction server. - Christian Cole; Jonathan D. Barber; Geoffrey J. Barton (Nucleic Acids Res., 2008)

Prophossi: automating expert validation of phosphopeptide-spectrum matches from tandem mass spectrometry. - David M. A. Martin; Isabelle R. E. Nett; Franck Vandermoere; Jonathan D. Barber; Nicholas A. Morrice; Michael A. J. Ferguson (Bioinform., 2010)