Automated gene processing and exon sequence retrieval. - Tazeen Fatima; Jonathan D. Marra; Ronald Realubit; Georgiy Schegolev; Katherine G. Herbert (ITiCSE, 2006)

Prediction of modulators of pyruvate kinase in smiles text using aprori methods. - Jason S. Caronna; Rojita Sharma; Jonathan D. Marra; Virginia L. Iuorno; Katherine G. Herbert; Jeffrey H. Toney (ITiCSE, 2007)

A study of phylogenetic tools for genomic nomenclature data cleaning. - Jonathan D. Marra; Katherine G. Herbert; Jason T. L. Wang (ITiCSE, 2007)