Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval. - Pascal Notin; Mafalda Dias; Jonathan Frazer; Javier Marchena-Hurtado; Aidan N. Gomez; Debora S. Marks; Yarin Gal (ICML, 2022)

Non-identifiability and the Blessings of Misspecification in Models of Molecular Fitness. - Eli N. Weinstein; Alan Nawzad Amin; Jonathan Frazer; Debora S. Marks (NeurIPS, 2022)

ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design. - Pascal Notin; Aaron Kollasch; Daniel Ritter 006; Lood van Niekerk; Steffanie Paul; Han Spinner; Nathan J. Rollins; Ada Shaw; Rose Orenbuch; Ruben Weitzman; Jonathan Frazer; Mafalda Dias; et al. (NeurIPS, 2023)