Combinatorial Binding in Human and Mouse Embryonic Stem Cells Identifies Conserved Enhancers Active in Early Embryonic Development. - Jonathan Göke; Marc Jung; Sarah Behrens; Lukas Chavez; Sean O'Keeffe; Bernd Timmermann; Hans Lehrach; James Adjaye; Martin Vingron (PLoS Comput. Biol., 2011)

Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts. - Jonathan Göke; Marcel H. Schulz; Julia Lasserre; Martin Vingron (Bioinform., 2012)

Analysis of long-distance gene regulatory elements (Analyse von weit entfernten genregulatorischen Elementen) - Jonathan Göke (2012)

An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets. - Florian Schmidt 003; Markus List; Engin Cukuroglu; Sebastian Köhler 001; Jonathan Göke; Marcel H. Schulz (Bioinform., 2018)

Genomic basis for RNA alterations in cancer. - Claudia Calabrese; Natalie R. Davidson; Deniz Demircioglu; Nuno A. Fonseca; Yao He; André Kahles; Kjong-Van Lehmann; Fenglin Liu; Yuichi Shiraishi; Cameron M. Soulette; Lara Urban; Liliana Greger; et al. (Nat., 2020)

Flexiplex: a versatile demultiplexer and search tool for omics data. - Oliver Cheng; Min Hao Ling; Changqing Wang; Shuyi Wu; Matthew E. Ritchie; Jonathan Göke; Noorul Amin; Nadia M. Davidson (Bioinform., 2024)