Efficient Detection of Periodic Orbits in Chaotic Systems by Stabilizing Transformations. - Jonathan J. Crofts; Ruslan L. Davidchack (SIAM J. Sci. Comput., 2006)

Googling the Brain: Discovering Hierarchical and Asymmetric Network Structures, with Applications in Neuroscience. - Jonathan J. Crofts; Desmond J. Higham (Internet Math., 2011)

Network analysis detects changes in the contralesional hemisphere following stroke. - Jonathan J. Crofts; Desmond J. Higham; Rose Bosnell; Saâd Jbabdi; Paul M. Matthews; T. E. J. Behrens; Heidi Johansen-Berg (NeuroImage, 2011)

A numerical simulation of neural fields on curved geometries. - R. Martin; David J. Chappell; Nadia Chuzhanova; Jonathan J. Crofts (J. Comput. Neurosci., 2018)

Modelling the impact of structural directionality on connectome-based models of neural activity. - Amelia Padmore; Martin R. Nelson; Nadia Chuzhanova; Jonathan J. Crofts (J. Complex Networks, 2020)

Spatial considerations in the resolution of inflammation: Elucidating leukocyte interactions via an experimentally-calibrated agent-based model. - Anahita Bayani; Joanne L. Dunster; Jonathan J. Crofts; Martin R. Nelson (PLoS Comput. Biol., 2020)

A Direction Preserving Discretization for Computing Phase-Space Densities. - David J. Chappell; Jonathan J. Crofts; Martin Richter; Gregor Tanner (SIAM J. Sci. Comput., 2021)