MultiRBP: multi-task neural network for protein-RNA binding prediction. - Jonathan Karin; Hagai Michel; Yaron Orenstein (BCB, 2021)

Interpreting single-cell and spatial omics data using deep neural network training dynamics. - Jonathan Karin; Reshef Mintz; Barak Raveh; Mor Nitzan (Nat. Comput. Sci., 2024)

Enhancing Swarms Durability to Threats via Graph Signal Processing and GNN-based Generative Modeling. - Jonathan Karin; Zoe Piran; Mor Nitzan (CoRR, 2025)