Learning Micro-Macro Models for Traffic Control Using Microscopic Data. - Jonathan Krook; Mladen Cicic; Karl Henrik Johansson (ECC, 2022)

Geometric shape matching for recovering protein conformations from single-particle Cryo-EM data. - Erik Jansson; Jonathan Krook; Klas Modin; Ozan Öktem (CoRR, 2024)

Direct Atomistic Reconstruction in Homogeneous Cryo-EM Using Protein Geometry Regularization. - Jonathan Krook; Willem Diepeveen; Ozan Öktem (SSVM (1), 2025)