Rare event simulation and combinatorial optimization using cross entropy: sequence alignment by rare event simulation. - Jonathan M. Keith; Dirk P. Kroese (WSC, 2002)

A simulated annealing algorithm for finding consensus sequences. - Jonathan M. Keith; Peter Adams 001; Darryn E. Bryant; Dirk P. Kroese; Keith R. Mitchelson; Duncan A. E. Cochran; Gita H. Lala (Bioinform., 2002)

Inferring an Original Sequence from Erroneous Copies : A Bayesian Approach. - Jonathan M. Keith; Peter Adams 001; Darryn E. Bryant; Keith R. Mitchelson; Duncan A. E. Cochran; Gita H. Lala (APBC, 2003)

Algorithms for sequence analysis via mutagenesis. - Jonathan M. Keith; Peter Adams 001; Darryn E. Bryant; Duncan A. E. Cochran; Gita H. Lala; Keith R. Mitchelson (Bioinform., 2004)

Segmenting Eukaryotic Genomes with the Generalized Gibbs Sampler. - Jonathan M. Keith (J. Comput. Biol., 2006)

Bayesian inference in estimation of distribution algorithms. - Marcus Gallagher; Ian A. Wood; Jonathan M. Keith; George Y. Sofronov (IEEE Congress on Evolutionary Computation, 2007)

Parallel cross-entropy optimization. - Gareth E. Evans; Jonathan M. Keith; Dirk P. Kroese (WSC, 2007)

Delineating Slowly and Rapidly Evolving Fractions of the Drosophila Genome. - Jonathan M. Keith; Peter Adams 001; Stuart Stephen; John S. Mattick (J. Comput. Biol., 2008)

Adaptive independence samplers. - Jonathan M. Keith; Dirk P. Kroese; George Y. Sofronov (Stat. Comput., 2008)

Estimating change-points in biological sequences via the cross-entropy method. - Gareth E. Evans; George Y. Sofronov; Jonathan M. Keith; Dirk P. Kroese (Ann. Oper. Res., 2011)

Model selection in Bayesian segmentation of multiple DNA alignments. - Christopher Oldmeadow; Jonathan M. Keith (Bioinform., 2011)

Methods for Identifying SNP Interactions: A Review on Variations of Logic Regression, Random Forest and Bayesian Logistic Regression. - Carla C. M. Chen; Holger Schwender; Jonathan M. Keith; Robin Nunkesser; Kerrie L. Mengersen; Paula E. Macrossan (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

A Bayesian method for comparing and combining binary classifiers in the absence of a gold standard. - Jonathan M. Keith; Christian M. Davey; Sarah E. Boyd (BMC Bioinform., 2012)

Prediction of signaling cross-talks contributing to acquired drug resistance in breast cancer cells by Bayesian statistical modeling. - A. K. M. Azad; Alfons Lawen; Jonathan M. Keith (BMC Syst. Biol., 2015)

Uniform Sampling of Directed and Undirected Graphs Conditional on Vertex Connectivity. - Salem A. Alyami; A. K. M. Azad; Jonathan M. Keith (Electron. Notes Discret. Math., 2016)