Finding Drugs with Common Downstream Effects, Using Direction Information in Biological Pathways. - Ryan A. Miller; Jonathan Mélius; Nuno Nunes 002; Egon L. Willighagen; Peter Woollard; Chris T. A. Evelo (SWAT4LS, 2016)

WikiPathways: capturing the full diversity of pathway knowledge. - Martina Kutmon; Anders Riutta; Nuno Nunes 002; Kristina Hanspers; Egon L. Willighagen; Anwesha Bohler; Jonathan Mélius; Andra Waagmeester; Sravanthi R. Sinha; Ryan A. Miller; Susan L. Coort; Elisa Cirillo; et al. (Nucleic Acids Res., 2016)

Visualizing Metabolomics Data in Directed Biological Networks. - Ryan A. Miller; Denise N. Slenter; Martina Kutmon; Jonathan Mélius; Georg Summer; Chris T. A. Evelo; Egon L. Willighagen (SWAT4LS, 2017)

Providing gene-to-variant and variant-to-gene database identifier mappings to use with BridgeDb mapping services. - Friederike Ehrhart; Jonathan Mélius; Elisa Cirillo; Martina Kutmon; Egon L. Willighagen; Susan L. Coort; Leopold M. G. Curfs; Chris T. A. Evelo (F1000Research, 2018)

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research. - Denise N. Slenter; Martina Kutmon; Kristina Hanspers; Anders Riutta; Jacob Windsor; Nuno Nunes 002; Jonathan Mélius; Elisa Cirillo; Susan L. Coort; Daniela Digles; Friederike Ehrhart; Pieter Giesbertz; et al. (Nucleic Acids Res., 2018)