GROOLS: Reactive Graph Reasoning for Genome Annotation. - Jonathan Mercier; David Vallenet (Challenge+DC@RuleML, 2015)

MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes. - David Vallenet; Alexandra Calteau; Stéphane Cruveiller; Mathieu Gachet; Aurélie Lajus; Adrien Josso; Jonathan Mercier; Alexandre Renaux; Johan Rollin; Zoé Rouy; David Roche; Claude Scarpelli; et al. (Nucleic Acids Res., 2017)

Evaluating Workflow Management Systems: A Bioinformatics Use Case. - Elise Larsonneur; Jonathan Mercier; Nicolas Wiart; Edith Le Floch; Olivier Delhomme; Vincent Meyer (BIBM, 2018)

GROOLS: reactive graph reasoning for genome annotation through biological processes. - Jonathan Mercier; Adrien Josso; Claudine Médigue; David Vallenet (BMC Bioinform., 2018)