Data filtering for automatic classification of rocks from reflectance spectra. - Jonathan Moody; Ricardo Bezerra de Andrade e Silva; Joseph Vanderwaart (KDD, 2001)

Classification and filtering of spectra: A case study in mineralogy. - Jonathan Moody; Ricardo Bezerra de Andrade e Silva; Joseph Vanderwaart; Joseph D. Ramsey; Clark Glymour (Intell. Data Anal., 2002)

Logical Mobility and Locality Types. - Jonathan Moody (LOPSTR, 2004)

High-throughput analysis of epistasis in genome-wide association studies with BiForce. - Attila Gyenesei; Jonathan Moody; Colin A. M. Semple; Chris S. Haley; Wenhua Wei (Bioinform., 2012)

BiForce Toolbox: powerful high-throughput computational analysis of gene-gene interactions in genome-wide association studies. - Attila Gyenesei; Jonathan Moody; Asta Laiho; Colin A. M. Semple; Chris S. Haley; Wenhua Wei (Nucleic Acids Res., 2012)

SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells. - Jonathan Moody; Tsukasa Kouno; Jen-Chien Chang; Yoshinari Ando; Piero Carninci; Jay W. Shin; Chung-Chau Hon (Bioinform., 2022)