Effect of Image Linearization on Normalized Compression Distance. - Jonathan Mortensen; Jia Jie Wu; Jacob Furst 001; John Rogers; Daniela Raicu (FGIT-SIP, 2009)

Comparing pharmacologic classes in NDF-RT and SNOMED CT. - Jonathan Mortensen; Olivier Bodenreider (Semantic Mining in Biomedicine, 2010)

Applications of Ontology Design Patterns in Biomedical Ontologies. - Jonathan Mortensen; Matthew Horridge; Mark A. Musen; Natalya Fridman Noy (AMIA, 2012)

Ontology Design Pattern Language Expressivity Requirements. - Matthew Horridge; Mikel Egaña Aranguren; Jonathan Mortensen; Mark A. Musen; Natalya Fridman Noy (WOP, 2012)

Modest Use of Ontology Design Patterns in a Repository of Biomedical Ontologies. - Jonathan Mortensen; Matthew Horridge; Mark A. Musen; Natalya Fridman Noy (WOP, 2012)

Crowdsourcing the Verification of Relationships in Biomedical Ontologies. - Jonathan Mortensen; Mark A. Musen; Natasha F. Noy (AMIA, 2013)

Ontology Quality Assurance with the Crowd. - Jonathan Mortensen; Mark A. Musen; Natalya Fridman Noy (HCOMP (Works in Progress / Demos), 2013)

Introducing WebProtégé 2 as a Collaborative Platform for Editing Biomedical Ontologies. - Matthew Horridge; Jonathan Mortensen; Tania Tudorache; Jennifer Vendetti; Csongor Nyulas; Mark A. Musen; Natalya Fridman Noy (ICBO, 2013)

Crowdsourcing Ontology Verification. - Jonathan Mortensen; Paul R. Alexander; Mark A. Musen; Natalya Fridman Noy (ICBO, 2013)

Enabling Complex Queries to Drug Information Sources through Functional Composition. - Lee B. Peters; Jonathan Mortensen; Thang Nguyen 004; Olivier Bodenreider (MedInfo, 2013)

Developing Crowdsourced Ontology Engineering Tasks: An iterative process. - Jonathan Mortensen; Mark A. Musen; Natasha F. Noy (CrowdSem, 2013)

Crowdsourcing Ontology Verification. - Jonathan Mortensen (ISWC (2), 2013)

Mechanical turk as an ontology engineer?: using microtasks as a component of an ontology-engineering workflow. - Natalya Fridman Noy; Jonathan Mortensen; Mark A. Musen; Paul R. Alexander (WebSci, 2013)

An empirically derived taxonomy of errors in SNOMED CT. - Jonathan M. Mortensen; Mark A. Musen; Natasha F. Noy (AMIA, 2014)

A Study on the Atomic Decomposition of Ontologies. - Matthew Horridge; Jonathan Mortensen; Bijan Parsia; Ulrike Sattler; Mark A. Musen (ISWC (2), 2014)

Using description logics to evaluate the consistency of drug-class membership relations in NDF-RT. - Rainer Winnenburg; Jonathan M. Mortensen; Olivier Bodenreider (J. Biomed. Semant., 2015)

Using the wisdom of the crowds to find critical errors in biomedical ontologies: a study of SNOMED CT. - Jonathan M. Mortensen; Evan P. Minty; Michael Januszyk; Timothy E. Sweeney; Alan L. Rector; Natalya Fridman Noy; Mark A. Musen (J. Am. Medical Informatics Assoc., 2015)

Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology. - Jonathan M. Mortensen; Natalie Telis; Jacob J. Hughey; Hua Fan-Minogue; Kimberly Van Auken; Michel Dumontier; Mark A. Musen (J. Biomed. Informatics, 2016)

Improved Ergonomic Risk Factor Assessment Using OpenSim and Inertial Measurement Units. - Jonathan Mortensen; Mitja Trkov; Andrew Merryweather (CHASE, 2018)