Engineering a Histone Reader Protein by Combining Directed Evolution, Sequencing, and Neural Network Based Ordinal Regression. - Jonathan Parkinson; Ryan Hard; Richard I. Ainsworth; Nan Li; Wei Wang 051 (J. Chem. Inf. Model., 2020)

Scalable Gaussian process regression enables accurate prediction of protein and small molecule properties with uncertainty quantitation. - Jonathan Parkinson; Wei Wang 051 (CoRR, 2023)

Linear-Scaling Kernels for Protein Sequences and Small Molecules Outperform Deep Learning While Providing Uncertainty Quantitation and Improved Interpretability. - Jonathan Parkinson; Wei Wang 051 (J. Chem. Inf. Model., 2023)

TUnA: an uncertainty-aware transformer model for sequence-based protein-protein interaction prediction. - Young Su Ko; Jonathan Parkinson; Cong Liu 030; Wei Wang 393 (Briefings Bioinform., 2024)