SubViral RNA: a database of the smallest known auto-replicable RNA species. - Martin Pelchat; Lynda Rocheleau; Jonathan Perreault; Jean-Pierre Perreault (Nucleic Acids Res., 2003)

RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signatures. - Jean-François Lucier; Jonathan Perreault; Jean-François Noël; Gilles Boire; Jean-Pierre Perreault (Nucleic Acids Res., 2007)

Identification of Hammerhead Ribozymes in All Domains of Life Reveals Novel Structural Variations. - Jonathan Perreault; Zasha Weinberg; Adam Roth; Olivia Popescu; Pascal Chartrand; Gerardo Ferbeyre; Ronald R. Breaker (PLoS Comput. Biol., 2011)

Evolutionary design and analysis of ribozyme-based logic gates. - Nicolas Kamel; Nawwaf Kharma; Jonathan Perreault (Genet. Program. Evolvable Mach., 2023)