The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction. - Jonathan R. Manning; Emily R. Jefferson; Geoffrey J. Barton (BMC Bioinform., 2008)

Automated seeding of specialised wiki knowledgebases with BioKb. - Jonathan R. Manning; Ann Hedley; John J. Mullins; Donald R. Dunbar (BMC Bioinform., 2009)

Expression Atlas update: from tissues to single cells. - Irene Papatheodorou; Pablo A. Moreno; Jonathan R. Manning; Alfonso Muñoz-Pomer Fuentes; Nancy George; Silvie Fexova; Nuno A. Fonseca; Anja Füllgrabe; Matthew Green 005; Ni Huang; Laura Huerta; Haider Iqbal; et al. (Nucleic Acids Res., 2020)

Expression Atlas update: gene and protein expression in multiple species. - Pablo A. Moreno; Silvie Fexova; Nancy George; Jonathan R. Manning; Zhichao Miao; Suhaib Mohammed; Alfonso Muñoz-Pomer Fuentes; Anja Füllgrabe; Yalan Bi; Natassja Bush; Haider Iqbal; Upendra Kumbham; et al. (Nucleic Acids Res., 2022)