Developing a Taxonomy for Research in Adverse Drug Events: Potholes and Signposts. - Jonathan R. Nebeker; John F. Hurdle; Jennifer M. Hoffman; Beverly Roth; Charlene R. Weir; Matthew H. Samore (J. Am. Medical Informatics Assoc., 2002)

Critical Gaps in the World's Largest Electronic Medical Record: Ad Hoc Nursing Narratives and Invisible Adverse Drug Events. - John F. Hurdle; Charlene R. Weir; Beverly Roth; Jennifer M. Hoffman; Jonathan R. Nebeker (AMIA, 2003)

Critical Issues in an Electronic Documentation System. - Charlene R. Weir; Jonathan R. Nebeker (AMIA, 2007)

Research Paper: A Cognitive Task Analysis of Information Management Strategies in a Computerized Provider Order Entry Environment. - Charlene R. Weir; Jonathan R. Nebeker; Bret L. Hicken; Rebecca Campo; Frank Drews; Beth LeBar (J. Am. Medical Informatics Assoc., 2007)

Informatics Tools for the Development of Action-Oriented Triggers for Outpatient Adverse Drug Events. - Hillary J. Mull; Jonathan R. Nebeker (AMIA, 2008)

Creating Reusable Annotated Corpora with the Clinical Document Architecture. - Scott L. DuVall; Keith W. Boone; Adi V. Gundlapalli; Brett R. South; Shuying Shen; Jonathan R. Nebeker; Leonard W. D'Avolio; Matthew H. Samore (HICSS, 2011)

Cognitive Analysis of a Medication Reconciliation Tool: Applying Laboratory and Naturalistic Approaches to System Evaluation. - André Kushniruk; Susan L. Santos; George Pourakis; Jonathan R. Nebeker; Kenneth S. Boockvar (ITCH, 2011)

The perception of medical professionals and medical students on the usefulness of an emergency medical card and a continuity of care report in enhancing continuity of care. - Christopher H. O. Olola; Scott P. Narus; Jonathan R. Nebeker; Mollie R. Poynton; Joseph Hales; Belle Rowan; Heather LeSieur; Cynthia Zumbrennen; Annemarie A. Edwards; Robert Crawford; Spencer Amundsen; Yasmin Kabir; et al. (Int. J. Medical Informatics, 2011)

CASPR: Friendly Annotation Management. - Tyler Forbush; Brad Adams; Shuying Shen; Brett R. South; Jonathan R. Nebeker; Scott L. DuVall (AMIA, 2012)

The Orderly and Effective Visit: Impact of the Electronic Health Record on Modes of Cognitive Control. - Charlene R. Weir; Frank Drews; Molly Leecaster; Robyn Barrus; Jonathan R. Nebeker (AMIA, 2012)

Synonym, Topic Model and Predicate-Based Query Expansion for Retrieving Clinical Documents. - Qing T. Zeng; Doug Redd; Thomas C. Rindflesch; Jonathan R. Nebeker (AMIA, 2012)

Effects of Electronic Health Records Systems on the Exam-Room Communication Skills of Resident Physicians. - Leslie Lenert; Farrant Sakaguchi; Robert Dunlea; Kurt Barsch; Jonathan R. Nebeker; Caroline Milne (AMIA, 2013)

Integrating Information Objects and Annotations in the Notional DoD-VA iEHR User Experience: Results from a randomized controlled trial on efficiency and accuracy of problem assessment and intervention specification. - Jonathan R. Nebeker; Charlene R. Weir; James L. Hellewell; Molly Leecaster; Frank Drews; Robyn Barrus; Daniel Bolton; Gopi Penmetsa; Amelia E. Underwood (AMIA, 2013)

Support For Contextual Control In Primary Care: A Qualitative Analysis. - Charlene R. Weir; Frank Drews; Jorie Butler; Makoto L. Jones; Robyn Barrus; Jonathan R. Nebeker (AMIA, 2013)

Improve Retrieval Performance on Clinical Notes: A Comparison of Four Methods. - Doug Redd; Thomas C. Rindflesch; Jonathan R. Nebeker; Qing Zeng-Treitler (HICSS, 2013)

Sophia: An Expedient UMLS Concept Extraction Annotator. - Guy Divita; Qing T. Zeng; Adi V. Gundlapalli; Scott L. DuVall; Jonathan R. Nebeker; Matthew H. Samore (AMIA, 2014)

Considerations of Dual Process Theories for EHR Design. - Charlene R. Weir; Bryan Smith Gibson; Alan H. Morris; Jorie Butler; Matthew H. Samore; Jonathan R. Nebeker (AMIA, 2014)

Brief communication: pSCANNER: patient-centered Scalable National Network for Effectiveness Research. - Lucila Ohno-Machado; Zia Agha; Douglas S. Bell; Lisa Dahm; Michele E. Day; Jason N. Doctor; Davera Gabriel; Maninder K. Kahlon; Katherine K. Kim; Michael A. Hogarth; Michael E. Matheny; Daniella Meeker; et al. (J. Am. Medical Informatics Assoc., 2014)

Transforming the National Department of Veterans Affairs Data Warehouse to the OMOP Common Data Model. - Fern FitzHenry; Jesse Brannen; Jason N. Denton; Jonathan R. Nebeker; Scott L. DuVall; Freneka F. Minter; Jeffrey Scehnet; Brian C. Sauer; Lucila Ohno-Machado; Michael E. Matheny (AMIA, 2015)

Electronic Health Management Platform (eHMP): The Next Phase of VA's EHR. - Jonathan R. Nebeker; Walter P. Nichol; Shane McNamee; Jessica Murphy; James L. Hellewell; Reese Omizo; Kristian Johnson; Margaret V. McDonald; Kensaku Kawamoto; Guilherme Del Fiol; Emory Fry; Elaine Hunolt; et al. (AMIA, 2015)

Uncovering the Cognitive Demands of EHR Use via Task Analysis. - Mark S. Pfaff; Ozgur Eris; Amanda Anganes; Tina Crotty; Jonathan R. Nebeker; Merry Ward (AMIA, 2015)

Maximizing clinical cohort size using free text queries. - Adi V. Gundlapalli; Doug Redd; Bryan Smith Gibson; Marjorie Carter; Chris Korhonen; Jonathan R. Nebeker; Matthew H. Samore; Qing Zeng-Treitler (Comput. Biol. Medicine, 2015)

Automated Detection of Privacy Sensitive Conditions in C-CDAs: Security Labeling Services at the Department of Veterans Affairs. - Omar Bouhaddou; Mike Davis; Margaret Donahue; Anthony Mallia; Stephania Griffin; Jennifer Teal; Jonathan R. Nebeker (AMIA, 2016)

VA's New Electronic Health Management Platform (eHMP): Novel Features for Activity Management and Notifications. - Jonathan R. Nebeker; Shane McNamee; David Douglas; James L. Hellewell; Kristian Johnson; Jessica Murphy; Ron Moody; Charlene R. Weir (AMIA, 2016)

Effect of health information exchange on recognition of medication discrepancies is interrupted when data charges are introduced: results of a cluster-randomized controlled trial. - Kenneth S. Boockvar; William Ho; Jennifer Pruskowski; Katherine E. DiPalo; Jane J. Wong; Jessica Patel; Jonathan R. Nebeker; Rainu Kaushal; William Hung (J. Am. Medical Informatics Assoc., 2017)

On-Demand Health Information Exchange Strategy: Estimating the Amount of Duplicate Documents Sent and Received. - Omar Bouhaddou; Nelson Hsing; Nitin Jain; Jim Malpass; Margaret Donahue; Jonathan R. Nebeker (AMIA, 2018)

Interoperability Progress and Remaining Data Quality Barriers of Certified Health Information Technologies. - John D. D'Amore; Omar Bouhaddou; Sandra Mitchell; Chun Li; Russell Leftwich; Todd Turner; Matthew Rahn; Margaret Donahue; Jonathan R. Nebeker (AMIA, 2018)

Veterans Health Information Exchange: Successes and Challenges of Nationwide Interoperability. - Margaret Donahue; Omar Bouhaddou; Nelson Hsing; Todd Turner; Glen Crandall; Joseph R. Nelson; Jonathan R. Nebeker (AMIA, 2018)

The Department of Defense (DoD) and Department of Veterans Affairs (VA) Infrastructure for Clinical Intelligence (DaVINCI). - Scott L. DuVall; Michael E. Matheny; Ildar R. Ibragimov; Trey D. Oats; Jay N. Tucker; Brett R. South; Augie Turano; Hamid Saoudian; Casey Kangas; Keith D. Hofmann; Wendy Funk; Chris Nichols; et al. (AMIA, 2018)

One-Way and Round-Trip Analysis Demonstrates Surprising Limitations of Standards-Based Terminology Maps. - Steven H. Brown; Loren Stevenson; Daniel Territo; Jonathan R. Nebeker; Michael J. Lincoln; John Kilbourne; Holly Miller (AMIA, 2019)

Topic Modeling to Discern Irregular Order Patterns in Unlabeled Electronic Health Records. - Özgür Özmen; Hilda B. Klasky; Olufemi A. Omitaomu; Mohammed M. Olama; P. Teja Kuruganti; Laura Pullum; Merry Ward; Jeanie M. Scott; Angela Laurio; Jonathan R. Nebeker (BHI, 2019)

A Tale of Two Databases: The DoD and VA Infrastructure for Clinical Intelligence (DaVINCI). - Scott L. DuVall; Michael E. Matheny; Ildar R. Ibragimov; Trey D. Oats; Jay N. Tucker; Brett R. South; Augie Turano; Hamid Saoudian; Casey Kangas; Keith D. Hofmann; Wendy Funk; Chris Nichols; et al. (MedInfo, 2019)

Adaptive Anomaly Detection for Dynamic Clinical Event Sequences. - Haoran Niu; Olufemi A. Omitaomu; Qing C. Cao; Mohammed M. Olama; Özgür Özmen; Hilda B. Klasky; Laura Pullum; Addi Thakur Malviya; P. Teja Kuruganti; Jeanie M. Scott; Angela Laurio; Frank Drews; et al. (IEEE BigData, 2020)

Converting Clinical Pathways to BPM+ Standards: A Case Study in Stable Ischemic Heart Disease. - Junghoon Chae; Byung H. Park; Makoto Jones; Merry Ward; Jonathan R. Nebeker (CBMS, 2020)

Characterizing Sub-Cohorts via Data Normalization and Representation Learning. - Everett Neil Rush; Özgür Özmen; Kathryn Knight; Byung H. Park; Clifton Baker; Makoto Jones; Merry Ward; Jonathan R. Nebeker (CBMS, 2020)

A Knowledge Network-Based Approach to Facilitate Annotation of Clinical Pathway Component Clusters. - S. M. Shamimul Hasan; Minsu Kim; Byung H. Park; Makoto M. Jones; Merry Ward; Jonathan R. Nebeker (BHI, 2021)

A new methodological framework for hazard detection models in health information technology systems. - Olufemi A. Omitaomu; Hilda B. Klasky; Mohammed M. Olama; Özgür Özmen; Laura Pullum; Addi Thakur Malviya; P. Teja Kuruganti; Jeanie M. Scott; Angela Laurio; Frank Drews; Brian C. Sauer; Merry Ward; et al. (J. Biomed. Informatics, 2021)

Analysis of the cognitive demands of electronic health record use. - Mark S. Pfaff; Ozgur Eris; Charlene R. Weir; Amanda Anganes; Tina Crotty; Mohammad Rahman; Merry Ward; Jonathan R. Nebeker (J. Biomed. Informatics, 2021)

Collaborative High Reliability Organization (HRO) Initiative in the Veterans Health Information Exchange (VHIE) Program. - Sandra Mitchell; Gay Stahr; Todd Turner; Jeffery Anderson; Jonathan R. Nebeker (AMIA, 2022)

Defining Long-Covid Profiles for Future Diagnoses Through Extensive Analysis of VA Covid-19 Data. - Skyler Resendez; Hugo Sebastian Ruiz Ayala; Wilmon McCray; Steven H. Brown; Jonathan R. Nebeker; Diane Montella; Peter L. Elkin (AMIA, 2022)

Real-time Multi-granular Analytics Framework for HIT Systems. - Byung H. Park; Sangkeun Lee 002; Özgür Özmen; Mohit Kumar; Merry Ward; Jonathan R. Nebeker (IEEE Big Data, 2022)

The Gaps in the Terminological Representation of the ACORN Social Determinants of Health Survey. - Melissa P. Resnick; Diane Montella; Wilmon McCray; Steven H. Brown; Keith E. Campbell; Jonathan R. Nebeker; Frank LeHouillier; Peter L. Elkin (ICBO, 2022)

Use of Event-Time Embeddings via RNN to Discern Novel Event Sequences in EHRs. - Özgür Özmen; Hilda B. Klasky; Olufemi A. Omitaomu; Mohammed M. Olama; P. Teja Kuruganti; Laura Pullum; Addi Thakur Malviya; Merry Ward; Jeanie M. Scott; Angela Laurio; Brian C. Sauer; Frank Drews; et al. (ICHI, 2022)

A Systematic Review of Healthcare Information Technology Anomaly Classification. - Laura Pullum; Olufemi A. Omitaomu; Mohammed M. Olama; Addi Thakur Malviya; Ozgur Ozmer; Hilda B. Klasky; P. Teja Kuruganti; Merry Ward; Jeanie M. Scott; Angela Laurio; Brian C. Sauer; Frank Drews; et al. (ICHI, 2022)

CDS-Compare: A Web Application for Machine Learning Assisted Curation of Clinical Order Sets. - Zackary Falls; Steven H. Brown; Naveed Shah; Frank LeHouillier; Randeep Badwal; Kendria Hall; Gillian Franklin; William H. Kelly; Andrew Holdaway; Diane Montella; Linda Wedemeyer; Sarita Keni; et al. (MIE, 2022)

Detecting anomalous sequences in electronic health records using higher-order tensor networks. - Haoran Niu; Olufemi A. Omitaomu; Michael A. Langston; Mohammed M. Olama; Özgür Özmen; Hilda B. Klasky; Angela Laurio; Brian C. Sauer; Merry Ward; Jonathan R. Nebeker (J. Biomed. Informatics, 2022)

Towards a Comparative Assessment of Data-Driven Process Models in Health Information Technology. - Hilda B. Klasky; Özgür Özmen; Olufemi A. Omitaomu; Mohammed M. Olama; Merry Ward; Angela Laurio; Jonathan R. Nebeker (ICHI, 2023)

CPViz: Visualizing clinical pathways represented in higher-order networks. - Junghoon Chae; Byung H. Park; Minsu Kim; Everett Neil Rush; Özgür Özmen; Makoto Jones; Merry Ward; Jonathan R. Nebeker (Visualization and Data Analysis, 2023)

EHR-BERT: A BERT-based model for effective anomaly detection in electronic health records. - Haoran Niu; Olufemi A. Omitaomu; Michael A. Langston; Mohammed M. Olama; Özgür Özmen; Hilda B. Klasky; Angela Laurio; Merry Ward; Jonathan R. Nebeker (J. Biomed. Informatics, 2024)

A framework for inferring and analyzing pharmacotherapy treatment patterns. - Everett Neil Rush; Özgür Özmen; Minsu Kim; Erin Rush Ortegon; Makoto Jones; Byung H. Park; Steven Pizer; Jodie Trafton; Lisa A. Brenner; Merry Ward; Jonathan R. Nebeker (BMC Medical Informatics Decis. Mak., 2024)

Anomaly Detection in Electronic Health Records Across Hospital Networks: Integrating Machine Learning With Graph Algorithms. - Haoran Niu; Olufemi A. Omitaomu; Michael A. Langston; Stephen K. Grady; Mohammed M. Olama; Özgür Özmen; Hilda B. Klasky; Angela Laurio; Merry Ward; Jonathan R. Nebeker (IEEE J. Biomed. Health Informatics, 2025)