The V1-V2-V3 complex: quasiconformal dipole maps in primate striate and extra-striate cortex. - Mukund Balasubramanian; Jonathan R. Polimeni; Eric L. Schwartz (Neural Networks, 2002)

Accurate prediction of V1 location from cortical folds in a surface coordinate system. - Oliver Hinds; Niranjini Rajendran; Jonathan R. Polimeni; Jean C. Augustinack; Graham C. Wiggins; Lawrence L. Wald; H. Diana Rosas; Andreas Potthast; Eric L. Schwartz; Bruce Fischl (NeuroImage, 2008)

Event-related single-shot volumetric functional magnetic resonance inverse imaging of visual processing. - Fa-Hsuan Lin; Thomas Witzel; Joseph B. Mandeville; Jonathan R. Polimeni; Thomas A. Zeffiro; Douglas N. Greve; Graham C. Wiggins; Lawrence L. Wald; John W. Belliveau (NeuroImage, 2008)

Predicting the location of entorhinal cortex from MRI. - Bruce Fischl; Allison Stevens; Niranjini Rajendran; B. T. Thomas Yeo; Douglas N. Greve; Koen Van Leemput; Jonathan R. Polimeni; Sita Kakunoori; Randy L. Buckner; Jennifer L. Pacheco; David H. Salat; Jennifer Melcher; et al. (NeuroImage, 2009)

Locating the functional and anatomical boundaries of human primary visual cortex. - Oliver Hinds; Jonathan R. Polimeni; Niranjini Rajendran; Mukund Balasubramanian; Katrin Amunts; Karl Zilles; Eric L. Schwartz; Bruce Fischl; Christina Triantafyllou (NeuroImage, 2009)

Exact Geodesics and Shortest Paths on Polyhedral Surfaces. - Mukund Balasubramanian; Jonathan R. Polimeni; Eric L. Schwartz (IEEE Trans. Pattern Anal. Mach. Intell., 2009)

Discrete Calculus - Applied Analysis on Graphs for Computational Science. - Leo J. Grady; Jonathan R. Polimeni (Springer, 2010)

Near-isometric flattening of brain surfaces. - Mukund Balasubramanian; Jonathan R. Polimeni; Eric L. Schwartz (NeuroImage, 2010)

Laminar analysis of 7 T BOLD using an imposed spatial activation pattern in human V1. - Jonathan R. Polimeni; Bruce Fischl; Douglas N. Greve; Lawrence L. Wald (NeuroImage, 2010)

Atlas-based segmentation for globus pallidus internus targeting on low-resolution MRI. - Maria Ida Iacono; Nikos Makris; Luca T. Mainardi; John T. Gale; André J. W. van der Kouwe; Azma Mareyam; Jonathan R. Polimeni; Lawrence L. Wald; Bruce Fischl; Emad N. Eskandar; Giorgio Bonmassar (EMBC, 2011)

Combined compressed sensing and parallel mri compared for uniform and random cartesian undersampling of K-space. - Daniel S. Weller; Jonathan R. Polimeni; Leo J. Grady; Lawrence L. Wald; Elfar Adalsteinsson; Vivek K. Goyal (ICASSP, 2011)

Fast Brain Matching with Spectral Correspondence. - Herve Lombaert; Leo J. Grady; Jonathan R. Polimeni; Farida Cheriet (IPMI, 2011)

Evaluating sparsity penalty functions for combined compressed sensing and parallel MRI. - Daniel S. Weller; Jonathan R. Polimeni; Leo J. Grady; Lawrence L. Wald; Elfar Adalsteinsson; Vivek K. Goyal (ISBI, 2011)

Physiological noise and signal-to-noise ratio in fMRI with multi-channel array coils. - Christina Triantafyllou; Jonathan R. Polimeni; Lawrence L. Wald (NeuroImage, 2011)

Accelerated parallel magnetic resonance imaging reconstruction using joint estimation with a sparse signal model. - Daniel S. Weller; Jonathan R. Polimeni; Leo J. Grady; Lawrence L. Wald; Elfar Adalsteinsson; Vivek K. Goyal (SSP, 2012)

T2* mapping and B0 orientation-dependence at 7 T reveal cyto- and myeloarchitecture organization of the human cortex. - Julien Cohen-Adad; Jonathan R. Polimeni; Karl G. Helmer; Thomas Benner; Jennifer A. McNab; Lawrence L. Wald; Bruce R. Rosen; Caterina Mainero (NeuroImage, 2012)

An implanted 8-channel array coil for high-resolution macaque MRI at 3 T. - Thomas Janssens; Boris Keil; Reza Farivar 001; Jennifer A. McNab; Jonathan R. Polimeni; Annelies Gerits; J. T. Arsenault; Lawrence L. Wald; Wim Vanduffel (NeuroImage, 2012)

Whole-head rapid fMRI acquisition using echo-shifted magnetic resonance inverse imaging. - Wei-Tang Chang; Aapo Nummenmaa; Thomas Witzel; Jyrki Ahveninen; Samantha Huang; Kevin Wen-Kai Tsai; Ying-Hua Chu; Jonathan R. Polimeni; John W. Belliveau; Fa-Hsuan Lin (NeuroImage, 2013)

The minimal preprocessing pipelines for the Human Connectome Project. - Matthew F. Glasser; Stamatios N. Sotiropoulos; J. Anthony Wilson; Timothy S. Coalson; Bruce Fischl; Jesper L. R. Andersson; Junqian Xu; Saâd Jbabdi; Matthew A. Webster; Jonathan R. Polimeni; David C. Van Essen; Mark Jenkinson (NeuroImage, 2013)

fMRI hemodynamics accurately reflects neuronal timing in the human brain measured by MEG. - Fa-Hsuan Lin; Thomas Witzel; Tommi Raij; Jyrki Ahveninen; Kevin Wen-Kai Tsai; Ying-Hua Chu; Wei-Tang Chang; Aapo Nummenmaa; Jonathan R. Polimeni; Wen-Jui Kuo; Jen-Chuen Hsieh; Bruce R. Rosen; et al. (NeuroImage, 2013)

Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex. - Jennifer A. McNab; Jonathan R. Polimeni; Ruopeng Wang; Jean Augustinack; Kyoko Fujimoto; Allison Stevens; Thomas Janssens; Reza Farivar 001; Rebecca D. Folkerth; Wim Vanduffel; Lawrence L. Wald (NeuroImage, 2013)

Corrigendum to "Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex" [NeuroImage 69 (2013) 87-100]. - Jennifer A. McNab; Jonathan R. Polimeni; Ruopeng Wang; Jean Augustinack; Kyoko Fujimoto; Allison Stevens; Christina Triantafyllou; Thomas Janssens; Reza Farivar 001; Rebecca D. Folkerth; Wim Vanduffel; Lawrence L. Wald (NeuroImage, 2013)

FOCUSR: Feature Oriented Correspondence Using Spectral Regularization-A Method for Precise Surface Matching. - Herve Lombaert; Leo J. Grady; Jonathan R. Polimeni; Farida Cheriet (IEEE Trans. Pattern Anal. Mach. Intell., 2013)

Sparsity-Promoting Calibration for GRAPPA Accelerated Parallel MRI Reconstruction. - Daniel S. Weller; Jonathan R. Polimeni; Leo J. Grady; Lawrence L. Wald; Elfar Adalsteinsson; Vivek K. Goyal (IEEE Trans. Medical Imaging, 2013)

Investigating the Capability to Resolve Complex White Matter Structures with High b-Value Diffusion Magnetic Resonance Imaging on the MGH-USC Connectom Scanner. - Qiuyun Fan; Aapo Nummenmaa; Thomas Witzel; Roberta Zanzonico; Boris Keil; Stephen F. Cauley; Jonathan R. Polimeni; M. Dylan Tisdall; Koene R. A. Van Dijk; Randy L. Buckner; Van J. Wedeen; Bruce R. Rosen; et al. (Brain Connect., 2014)

Quantitative comparison of cortical surface reconstructions from MP2RAGE and multi-echo MPRAGE data at 3 and 7 T. - Kyoko Fujimoto; Jonathan R. Polimeni; André J. W. van der Kouwe; Martin Reuter 001; Tobias Kober; Thomas Benner; Bruce Fischl; Lawrence L. Wald (NeuroImage, 2014)

A study-specific fMRI normalization approach that operates directly on high resolution functional EPI data at 7 Tesla. - Günther Grabner; Benedikt A. Poser; Kyoko Fujimoto; Jonathan R. Polimeni; Lawrence L. Wald; Siegfried Trattnig; Ivan Toni; Markus Barth (NeuroImage, 2014)

Corrigendum to "fMRI hemodynamics accurately reflects neuronal timing in the human brain measured by MEG" [Neuroimage 78 (2013) 372-384]. - Fa-Hsuan Lin; Thomas Witzel; Tommi Raij; Jyrki Ahveninen; Kevin Wen-Kai Tsai; Ying-Hua Chu; Wei-Tang Chang; Aapo Nummenmaa; Jonathan R. Polimeni; Wen-Jui Kuo; Jen-Chuen Hsieh; Bruce R. Rosen; et al. (NeuroImage, 2014)

Dynamic and static contributions of the cerebrovasculature to the resting-state BOLD signal. - Sungho Tak; Danny J. J. Wang; Jonathan R. Polimeni; Lirong Yan; J. Jean Chen (NeuroImage, 2014)

Dynamic functional imaging of brain glucose utilization using fPET-FDG. - Marjorie Villien; Hsiao-Ying Wey; Joseph B. Mandeville; Ciprian Catana; Jonathan R. Polimeni; Christin Y. M. Sander; Nicole R. Zürcher; Daniel B. Chonde; Joanna S. Fowler; Bruce R. Rosen; Jacob M. Hooker (NeuroImage, 2014)

A dual-polarity grappa kernel for the robust reconstruction of accelerated EPI data. - William Scott Hoge; Jonathan R. Polimeni (ISBI, 2015)

Toward an In Vivo Neuroimaging Template of Human Brainstem Nuclei of the Ascending Arousal, Autonomic, and Motor Systems. - Marta Bianciardi; Nicola Toschi; Brian L. Edlow; Cornelius Eichner; Kawin Setsompop; Jonathan R. Polimeni; Emery N. Brown; Hannah C. Kinney; Bruce R. Rosen; Lawrence L. Wald (Brain Connect., 2015)

Associations of Resting-State fMRI Functional Connectivity with Flow-BOLD Coupling and Regional Vasculature. - Sungho Tak; Jonathan R. Polimeni; Danny J. J. Wang; Lirong Yan; J. Jean Chen (Brain Connect., 2015)

Intracortical depth analyses of frequency-sensitive regions of human auditory cortex using 7T fMRI. - Jyrki Ahveninen; Wei-Tang Chang; Samantha Huang; Boris Keil; Norbert Kopco; Stephanie Rossi; Giorgio Bonmassar; Thomas Witzel; Jonathan R. Polimeni (NeuroImage, 2016)

Rapid multi-orientation quantitative susceptibility mapping. - Berkin Bilgic; Luke Xie; Russell Dibb; Christian Langkammer; Aysegul Mutluay; Huihui Ye; Jonathan R. Polimeni; Jean Augustinack; Chunlei Liu 004; Lawrence L. Wald; Kawin Setsompop (NeuroImage, 2016)

MGH-USC Human Connectome Project datasets with ultra-high b-value diffusion MRI. - Qiuyun Fan; Thomas Witzel; Aapo Nummenmaa; Koene R. A. Van Dijk; John D. Van Horn; Michelle K. Drews; Leah H. Somerville; Margaret A. Sheridan; Rosario M. Santillana; Jenna Snyder; Trey Hedden; Emily E. Shaw; et al. (NeuroImage, 2016)

Automatic cortical surface reconstruction of high-resolution T1 echo planar imaging data. - Ville Renvall; Thomas Witzel; Lawrence L. Wald; Jonathan R. Polimeni (NeuroImage, 2016)

Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration. - Tong Tong 001; Iman Aganj; Tian Ge; Jonathan R. Polimeni; Bruce Fischl (NeuroImage, 2017)

Reduction of across-run variability of temporal SNR in accelerated EPI time-series data through FLEET-based robust autocalibration. - Anna Blazejewska; Himanshu Bhat; Lawrence L. Wald; Jonathan R. Polimeni (NeuroImage, 2017)

HIgh b-value and high Resolution Integrated Diffusion (HIBRID) imaging. - Qiuyun Fan; Aapo Nummenmaa; Jonathan R. Polimeni; Thomas Witzel; Susie Yi Huang; Van J. Wedeen; Bruce R. Rosen; Lawrence L. Wald (NeuroImage, 2017)

Impacting the effect of fMRI noise through hardware and acquisition choices - Implications for controlling false positive rates. - Lawrence L. Wald; Jonathan R. Polimeni (NeuroImage, 2017)

Characterizing Signals Within Lesions and Mapping Brain Network Connectivity After Traumatic Axonal Injury: A 7 Tesla Resting-State FMRI Study. - Seul Lee; Jonathan R. Polimeni; Collin M. Price; Brian L. Edlow; Jennifer A. McNab (Brain Connect., 2018)

Highly Accelerated Multishot EPI through Synergistic Combination of Machine Learning and Joint Reconstruction. - Berkin Bilgic; Itthi Chatnuntawech; Mary Kate Manhard; Qiyuan Tian; Congyu Liao; Stephen F. Cauley; Susie Yi Huang; Jonathan R. Polimeni; Lawrence L. Wald; Kawin Setsompop (CoRR, 2018)

Stimulus-dependent hemodynamic response timing across the human subcortical-cortical visual pathway identified through high spatiotemporal resolution 7T fMRI. - Laura D. Lewis; Kawin Setsompop; Bruce R. Rosen; Jonathan R. Polimeni (NeuroImage, 2018)

Relative latency and temporal variability of hemodynamic responses at the human primary visual cortex. - Fa-Hsuan Lin; Jonathan R. Polimeni; Jo-Fu Lotus Lin; Kevin Wen-Kai Tsai; Ying-Hua Chu; Pu-Yeh Wu; Yi-Tien Li; Yi-Cheng Hsu; Shang-Yueh Tsai; Wen-Jui Kuo (NeuroImage, 2018)

Analysis strategies for high-resolution UHF-fMRI data. - Jonathan R. Polimeni; Ville Renvall; Natalia Zaretskaya; Bruce Fischl (NeuroImage, 2018)

Neuroimaging with ultra-high field MRI: Present and future. - Jonathan R. Polimeni; Kâmil Uludag (NeuroImage, 2018)

Challenges and opportunities for brainstem neuroimaging with ultrahigh field MRI. - Roberta Sclocco; Florian Beissner; Marta Bianciardi; Jonathan R. Polimeni; Vitaly Napadow (NeuroImage, 2018)

Advantages of cortical surface reconstruction using submillimeter 7 T MEMPRAGE. - Natalia Zaretskaya; Bruce Fischl; Martin Reuter 001; Ville Renvall; Jonathan R. Polimeni (NeuroImage, 2018)

Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data. - Anna I. Blazejewska; Bruce Fischl; Lawrence L. Wald; Jonathan R. Polimeni (NeuroImage, 2019)

On the analysis of rapidly sampled fMRI data. - Jingyuan E. Chen; Jonathan R. Polimeni; Saskia Bollmann; Gary H. Glover (NeuroImage, 2019)

Laminar (f)MRI: A short history and future prospects. - David G. Norris; Jonathan R. Polimeni (NeuroImage, 2019)

Dependence of resting-state fMRI fluctuation amplitudes on cerebral cortical orientation relative to the direction of B0 and anatomical axes. - Olivia Viessmann; Klaus Scheffler; Marta Bianciardi; Lawrence L. Wald; Jonathan R. Polimeni (NeuroImage, 2019)

Impact of prospective motion correction, distortion correction methods and large vein bias on the spatial accuracy of cortical laminar fMRI at 9.4 Tesla. - Jonas Bause; Jonathan R. Polimeni; Johannes Stelzer; Myung-Ho In; Philipp Ehses; Pablo Kraemer-Fernandez; Ali Aghaeifar; Eric Lacosse; Rolf Pohmann; Klaus Scheffler (NeuroImage, 2020)

Resting-state "physiological networks". - Jingyuan E. Chen; Laura D. Lewis; Catie Chang; Qiyuan Tian; Nina E. Fultz; Ned A. Ohringer; Bruce R. Rosen; Jonathan R. Polimeni (NeuroImage, 2020)

In vivo functional localization of the temporal monocular crescent representation in human primary visual cortex. - Shahin Nasr; Cristen LaPierre; Christopher E. Vaughn; Thomas Witzel; Jason P. Stockmann; Jonathan R. Polimeni (NeuroImage, 2020)

DeepDTI: High-fidelity six-direction diffusion tensor imaging using deep learning. - Qiyuan Tian; Berkin Bilgic; Qiuyun Fan; Congyu Liao; Chanon Ngamsombat; Yuxin Hu; Thomas Witzel; Kawin Setsompop; Jonathan R. Polimeni; Susie Yi Huang (NeuroImage, 2020)

Eye-selective fMRI activity in human primary visual cortex: Comparison between 3 ​T and 9.4 ​T, and effects across cortical depth. - Natalia Zaretskaya; Jonas Bause; Jonathan R. Polimeni; Pablo R. Grassi; Klaus Scheffler; Andreas M. Bartels (NeuroImage, 2020)

SRDTI: Deep learning-based super-resolution for diffusion tensor MRI. - Qiyuan Tian; Ziyu Li; Qiuyun Fan; Chanon Ngamsombat; Yuxin Hu; Congyu Liao; Fuyixue Wang; Kawin Setsompop; Jonathan R. Polimeni; Berkin Bilgic; Susie Yi Huang (CoRR, 2021)

Investigating mechanisms of fast BOLD responses: The effects of stimulus intensity and of spatial heterogeneity of hemodynamics. - Jingyuan E. Chen; Gary H. Glover; Nina E. Fultz; Bruce R. Rosen; Jonathan R. Polimeni; Laura D. Lewis (NeuroImage, 2021)

Ground-truth "resting-state" signal provides data-driven estimation and correction for scanner distortion of fMRI time-series dynamics. - Rajat Kumar; Liang Tan; Alan Kriegstein; Andrew Lithen; Jonathan R. Polimeni; Lilianne R. Mujica-Parodi; Helmut H. Strey (NeuroImage, 2021)

Improved cortical surface reconstruction using sub-millimeter resolution MPRAGE by image denoising. - Qiyuan Tian; Natalia Zaretskaya; Qiuyun Fan; Chanon Ngamsombat; Berkin Bilgic; Jonathan R. Polimeni; Susie Yi Huang (NeuroImage, 2021)

Simultaneous pure T2 and varying T2′-weighted BOLD fMRI using Echo Planar Time-resolved Imaging for mapping cortical-depth dependent responses. - Fuyixue Wang; Zijing Dong; Lawrence L. Wald; Jonathan R. Polimeni; Kawin Setsompop (NeuroImage, 2021)

Slice-direction geometric distortion evaluation and correction with reversed slice-select gradient acquisitions. - Anna I. Blazejewska; Thomas Witzel; Jesper L. R. Andersson; Lawrence L. Wald; Jonathan R. Polimeni (NeuroImage, 2022)

SDnDTI: Self-supervised deep learning-based denoising for diffusion tensor MRI. - Qiyuan Tian; Ziyu Li; Qiuyun Fan; Jonathan R. Polimeni; Berkin Bilgic; David H. Salat; Susie Yi Huang (NeuroImage, 2022)

Diffusion MRI data analysis assisted by deep learning synthesized anatomical images (DeepAnat). - Ziyu Li; Qiuyun Fan; Berkin Bilgic; Guangzhi Wang; Wenchuan Wu 003; Jonathan R. Polimeni; Karla L. Miller; Susie Yi Huang; Qiyuan Tian (Medical Image Anal., 2023)

Mesoscale Brain Mapping: Bridging Scales and Modalities in Neuroimaging - A Symposium Review. - Joshua K. Marchant; Natalie G. Ferris; Diana Grass; Magdelena S. Allen; Vivek Gopalakrishnan; Mark D. Olchanyi; Devang Sehgal; Maxina Sheft; Amelia Strom; Berkin Bilgic; Brian L. Edlow; Elizabeth M. C. Hillman; et al. (Neuroinformatics, 2024)