T: A Dialect of Lisp or, LAMBDA: The Ultimate Software Tool. - Jonathan Rees; Norman Adams (Symposium on LISP and Functional Programming, 1982)

Orbit: an optimizing compiler for scheme (with retrospective) - David A. Kranz; Richard Kelsey; Jonathan Rees; Paul Hudak; James Philbin; Norman Adams (Best of PLDI, 1986)

ORBIT: an optimizing compiler for scheme. - David A. Kranz; Richard Kelsey; Jonathan Rees; Paul Hudak; James Philbin (SIGPLAN Symposium on Compiler Construction, 1986)

Revised3 report on the algorithmic language scheme. - Jonathan Rees; William D. Clinger (ACM SIGPLAN Notices, 1986)

Object-Oriented Programming in Scheme. - Norman Adams; Jonathan Rees (LISP and Functional Programming, 1988)

Syntactic Closures. - Alan Bawden; Jonathan Rees (LISP and Functional Programming, 1988)

Macros That Work. - William D. Clinger; Jonathan Rees (POPL, 1991)

Program mobile robots in Scheme. - Jonathan Rees; Bruce Randall Donald (ICRA, 1992)

A Tractable Scheme Implementation. - Richard Kelsey; Jonathan Rees (LISP Symb. Comput., 1994)

A security kernel based on the lambda-calculus. - Jonathan Rees (1995)

Revised5 Report on the Algorithmic Language Scheme. - Richard Kelsey; William D. Clinger; Jonathan Rees (ACM SIGPLAN Notices, 1998)

Consistency Management for Distributed Collaboration. - Jonathan Rees; Sarah Ferguson; Sankar Virdhagriswaran (ACM Comput. Surv., 1999)

Experience Using OWL DL for the Exchange of Biological Pathway Information. - Alan Ruttenberg; Jonathan Rees; Joanne Luciano (OWLED, 2005)

What BioPAX Communicates and how to extend OWL to help it. - Alan Ruttenberg; Jonathan Rees; Jeremy Zucker (OWLED, 2006)

Advancing translational research with the Semantic Web. - Alan Ruttenberg; Tim Clark; William J. Bug; Matthias Samwald; Olivier Bodenreider; Helen Chen; Donald Doherty; Kerstin Forsberg; Yong Gao; Vipul Kashyap; June Kinoshita; Joanne Luciano; et al. (BMC Bioinform., 2007)

A Query-by-Example Content-Based Image Retrieval System of Non-melanoma Skin Lesions. - Lucia Ballerini; Xiang Li; Robert B. Fisher; Jonathan Rees (MCBR-CDS, 2009)

Depth Data Improves Skin Lesion Segmentation. - Xiang Li; Ben Aldridge; Lucia Ballerini; Robert B. Fisher; Jonathan Rees (MICCAI (1), 2009)

Life sciences on the Semantic Web: the Neurocommons and beyond. - Alan Ruttenberg; Jonathan Rees; Matthias Samwald; M. Scott Marshall (Briefings Bioinform., 2009)

Content-Based Image Retrieval of Skin Lesions by Evolutionary Feature Synthesis. - Lucia Ballerini; Xiang Li; Robert B. Fisher; Ben Aldridge; Jonathan Rees (EvoApplications (1), 2010)

Estimating the ground truth from multiple individual segmentations incorporating prior pattern analysis with application to skin lesion segmentation. - Xiang Li; Ben Aldridge; Robert B. Fisher; Jonathan Rees (ISBI, 2011)

Non-melanoma skin lesion classification using colour image data in a hierarchical K-NN classifier. - Lucia Ballerini; Robert B. Fisher; Ben Aldridge; Jonathan Rees (ISBI, 2012)

URIs in data: for entities, or for descriptions of entities - A critical analysis. - Henry S. Thompson; Jonathan Rees; Jeni Tennison (WebSci, 2013)

Wireless Body Sensor for Objective Assessment of Surgical Performance on a Standardised FLS Task. - Georgina Kirby; Richard Kwasnicki; Caroline Hargrove; Jonathan Rees; Mikael Hans Sodergren; Guang-Zhong Yang; Benny Lo (BODYNETS, 2014)

Phylesystem: a git-based data store for community-curated phylogenetic estimates. - Emily Jane McTavish; Cody E. Hinchliff; James F. Allman; Joseph W. Brown; Karen Cranston; Mark T. Holder; Jonathan Rees; Stephen A. Smith (Bioinform., 2015)

Classification of Ten Skin Lesion Classes: Hierarchical KNN versus Deep Net. - Robert B. Fisher; Jonathan Rees; Antoine Bertrand (MIUA, 2019)