On stabilization of switched linear systems. - Zvi Artstein; Jonathan Ronen (Syst. Control. Lett., 2008)

netSmooth: Network-smoothing based imputation for single cell RNA-seq. - Jonathan Ronen; Altuna Akalin (F1000Research, 2018)

Integrative analysis of data from multiple experiments - Jonathan Ronen (2020)

scMaui: a widely applicable deep learning framework for single-cell multiomics integration in the presence of batch effects and missing data. - Yunhee Jeong; Jonathan Ronen; Wolfgang Kopp; Pavlo Lutsik; Altuna Akalin (BMC Bioinform., 2024)