Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss. - Guotai Wang; Jonathan Shapey; Wenqi Li 001; Reuben Dorent; Alex Demitriadis; Sotirios Bisdas; Ian Paddick; Robert Bradford; Shaoting Zhang 001; Sébastien Ourselin; Tom Vercauteren (MICCAI (2), 2019)

Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss. - Guotai Wang; Jonathan Shapey; Wenqi Li 001; Reuben Dorent; Alex Demitriadis; Sotirios Bisdas; Ian Paddick; Robert Bradford; Sébastien Ourselin; Tom Vercauteren (CoRR, 2019)

Scribble-Based Domain Adaptation via Co-segmentation. - Reuben Dorent; Samuel Joutard; Jonathan Shapey; Sotirios Bisdas; Neil Kitchen; Robert Bradford; Shakeel R. Saeed; Marc Modat; Sébastien Ourselin; Tom Vercauteren (MICCAI (1), 2020)

Manual segmentation versus semi-automated segmentation for quantifying vestibular schwannoma volume on MRI. - Hari McGrath; Peichao Li; Reuben Dorent; Robert Bradford; Shakeel R. Saeed; Sotirios Bisdas; Sébastien Ourselin; Jonathan Shapey; Tom Vercauteren (Int. J. Comput. Assist. Radiol. Surg., 2020)

Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image Segmentation. - Reuben Dorent; Samuel Joutard; Jonathan Shapey; Aaron Kujawa; Marc Modat; Sébastien Ourselin; Tom Vercauteren (MICCAI (2), 2021)

Integrated multi-modality image-guided navigation for neurosurgery: open-source software platform using state-of-the-art clinical hardware. - Jonathan Shapey; Thomas Dowrick; Rémi Delaunay; Eleanor C. Mackle; Stephen A. Thompson; Mirek Janatka; Roland Guichard; Anastasis Georgoulas; David Pérez-Suárez; Robert Bradford; Shakeel R. Saeed; Sébastien Ourselin; et al. (Int. J. Comput. Assist. Radiol. Surg., 2021)

Inter Extreme Points Geodesics for Weakly Supervised Segmentation. - Reuben Dorent; Samuel Joutard; Jonathan Shapey; Aaron Kujawa; Marc Modat; Sébastien Ourselin; Tom Vercauteren (CoRR, 2021)

Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. - Navodini Wijethilake; Aaron Kujawa; Reuben Dorent; Muhammad Asad 001; Anna Oviedova; Tom Vercauteren; Jonathan Shapey (MLCN@MICCAI, 2022)

Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction. - Peichao Li; Michael Ebner; Philip J. Noonan; Conor C. Horgan; Anisha Bahl; Sébastien Ourselin; Jonathan Shapey; Tom Vercauteren (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2022)

CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation. - Reuben Dorent; Aaron Kujawa; Marina Ivory; Spyridon Bakas; Nicola Rieke; Samuel Joutard; Ben Glocker; Jorge Cardoso 002; Marc Modat; Kayhan Batmanghelich; Arseniy Belkov; Maria G. Baldeon Calisto; et al. (CoRR, 2022)

Deep Reinforcement Learning Based System for Intraoperative Hyperspectral Video Autofocusing. - Charlie Budd; Jianrong Qiu; Oscar MacCormac; Martin Huber; Christopher E. Mower; Mirek Janatka; Théo Trotouin; Jonathan Shapey; Mads S. Bergholt; Tom Vercauteren (MICCAI (9), 2023)

Spatial gradient consistency for unsupervised learning of hyperspectral demosaicking: application to surgical imaging. - Peichao Li; Muhammad Asad 001; Conor C. Horgan; Oscar MacCormac; Jonathan Shapey; Tom Vercauteren (Int. J. Comput. Assist. Radiol. Surg., 2023)

MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision. - Jianning Li 002; Antonio Pepe 003; Christina Gsaxner; Gijs Luijten; Yuan Jin; Narmada Ambigapathy; Enrico Nasca; Naida Solak; Gian Marco Melito; Afaque R. Memon; Xiaojun Chen 003; Jan Stefan Kirschke; et al. (CoRR, 2023)

A Clinical Guideline Driven Automated Linear Feature Extraction for Vestibular Schwannoma. - Navodini Wijethilake; Steve Connor; Anna Oviedova; Rebecca Burger; Tom Vercauteren; Jonathan Shapey (CoRR, 2023)

CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation. - Reuben Dorent; Aaron Kujawa; Marina Ivory; Spyridon Bakas; Nicola Rieke; Samuel Joutard; Ben Glocker; M. Jorge Cardoso; Marc Modat; Kayhan Batmanghelich; Arseniy Belkov; Maria G. Baldeon Calisto; et al. (Medical Image Anal., 2023)

TISS-net: Brain tumor image synthesis and segmentation using cascaded dual-task networks and error-prediction consistency. - Jianghao Wu 001; Dong Guo; Lu Wang; Shuojue Yang; Yuanjie Zheng; Jonathan Shapey; Tom Vercauteren; Sotirios Bisdas; Robert Bradford; Shakeel R. Saeed; Neil Kitchen; Sébastien Ourselin; et al. (Neurocomputing, 2023)

A self-supervised and adversarial approach to hyperspectral demosaicking and RGB reconstruction in surgical imaging. - Peichao Li; Oscar MacCormac; Jonathan Shapey; Tom Vercauteren (BMVC, 2024)

Blood Harmonisation of Endoscopic Transsphenoidal Surgical Video Frames on Phantom Models. - Mahrukh Saeed; Julien Quarez; Hassna Irzan; Bava Kesavan; Matthew Elliot; Oscar MacCormac; James Knight; Sébastien Ourselin; Jonathan Shapey; Alejandro Granados (ISBI, 2024)

MUTUAL: Towards Holistic Sensing and Inference in the Operating Room. - Julien Quarez; Yang Li; Hassna Irzan; Matthew Elliot; Oscar MacCormac; James Knigth; Martin Huber; Toktam Mahmoodi; Prokar Dasgupta; Sébastien Ourselin; Nicholas Raison; Jonathan Shapey; et al. (ISIC/iMIMIC/EARTH/DeCaF@MICCAI, 2024)

Brain Tumor Segmentation (BraTS) Challenge 2024: Meningioma Radiotherapy Planning Automated Segmentation. - Dominic LaBella; Katherine Schumacher; Michael Mix; Kevin Leu; Shan McBurney-Lin; Pierre Nedelec; Javier E. Villanueva-Meyer; Jonathan Shapey; Tom Vercauteren; Kazumi Chia; Omar Al-Salihi; Justin Leu; et al. (CoRR, 2024)

R-Trans - A Recurrent Transformer Model for Clinical Feedback in Surgical Skill Assessment. - Julien Quarez; Matthew Elliot; Oscar MacCormac; Nawal Khan; Marc Modat; Sébastien Ourselin; Jonathan Shapey; Alejandro Granados (CoRR, 2024)

Scribble-Based Interactive Segmentation of Medical Hyperspectral Images. - Zhonghao Wang; Junwen Wang; Charlie Budd; Oscar MacCormac; Jonathan Shapey; Tom Vercauteren (CoRR, 2024)

OOD-SEG: Out-Of-Distribution detection for image SEGmentation with sparse multi-class positive-only annotations. - Junwen Wang; Zhonghao Wang; Oscar MacCormac; Jonathan Shapey; Tom Vercauteren (CoRR, 2024)

Deep learning for automatic segmentation of vestibular schwannoma: a retrospective study from multi-center routine MRI. - Aaron Kujawa; Reuben Dorent; Steve Connor; Suki Thomson; Marina Ivory; Ali Vahedi; Emily Guilhem; Navodini Wijethilake; Robert Bradford; Neil Kitchen; Sotirios Bisdas; Sébastien Ourselin; et al. (Frontiers Comput. Neurosci., 2024)

UltraFlwr - An Efficient Federated Medical and Surgical Object Detection Framework. - Yang Li; Soumya Snigdha Kundu; Maxence Boels; Toktam Mahmoodi; Sébastien Ourselin; Tom Vercauteren; Prokar Dasgupta; Jonathan Shapey; Alejandro Granados (CoRR, 2025)

A generalisable head MRI defacing pipeline: Evaluation on 2,566 meningioma scans. - Lorena Garcia-Foncillas Macias; Aaron Kujawa; Aya Elshalakany; Jonathan Shapey; Tom Vercauteren (CoRR, 2025)

crossMoDA Challenge: Evolution of Cross-Modality Domain Adaptation Techniques for Vestibular Schwannoma and Cochlea Segmentation from 2021 to 2023. - Navodini Wijethilake; Reuben Dorent; Marina Ivory; Aaron Kujawa; Stefan Cornelissen; Patrick Langenhuizen; Mohamed Okasha; Anna Oviedova; Hexin Dong; Bogyeong Kang; Guillaume Sallé; Luyi Han; et al. (CoRR, 2025)

Systematic Review of Pituitary Gland and Pituitary Adenoma Automatic Segmentation Techniques in Magnetic Resonance Imaging. - Mubaraq Yakubu; Navodini Wijethilake; Jonathan Shapey; Andrew P. King; Alexander Hammers (CoRR, 2025)

Tree-based Semantic Losses: Application to Sparsely-supervised Large Multi-class Hyperspectral Segmentation. - Junwen Wang; Oscar MacCormac; William Rochford; Aaron Kujawa; Jonathan Shapey; Tom Vercauteren (CoRR, 2025)

X-RAFT: Cross-Modal Non-Rigid Registration of Blue and White Light Neurosurgical Hyperspectral Images. - Charlie Budd; Silvère Ségaud; Matthew Elliot; Graeme Stasiuk; Yijing Xie; Jonathan Shapey; Tom Vercauteren (CoRR, 2025)

Label tree semantic losses for rich multi-class medical image segmentation. - Junwen Wang; Oscar MacCormac; William Rochford; Aaron Kujawa; Jonathan Shapey; Tom Vercauteren (CoRR, 2025)

Themed Challenges to Solve Data Scarcity in Africa: A Proposition for Increasing Local Data Collection and Integration. - Mubaraq Yakubu; Udunna Anazodo; Maruf Adewole; Theodore Barfoot; Tiarna Lee; Tom Vercauteren; Jonathan Shapey; Andrew P. King; Alexander Hammers (CoRR, 2025)