Modulated-Alignment Dual-Axis (MAD) Confocal Microscopy Optimized for Speed and Contrast. - Steven Y. Leigh; Ye Chen; Jonathan T. C. Liu (IEEE Trans. Biomed. Eng., 2016)

Measuring and Mitigating Speckle Noise in Dual-Axis Confocal Microscopy Images. - Davit Gigilashvili; Chengbo Yin; Jonathan T. C. Liu; Jon Yngve Hardeberg; Marius Pedersen (SITIS, 2018)

Three-dimensional histo-morphometric features from light sheet microscopy images result in improved discrimination of benign from malignant glands in prostate cancer. - Can Fahrettin Koyuncu; Andrew Janowczyk; Cheng Lu 001; Patrick Leo; Mehdi Alilou; Adam K. Glaser; Nicholas P. Reder; Jonathan T. C. Liu; Anant Madabhushi (Digital Pathology, 2020)

Weakly Supervised AI for Efficient Analysis of 3D Pathology Samples. - Andrew H. Song; Mane Williams; Drew F. K. Williamson; Guillaume Jaume; Andrew Zhang; Bowen Chen; Robert Serafin; Jonathan T. C. Liu; Alexander S. Baras; Anil V. Parwani; Faisal Mahmood 001 (CoRR, 2023)

Comprehensive Surface Histology of Fresh Resection Margins With Rapid Open-Top Light-Sheet (OTLS) Microscopy. - Gan Gao; Dominie Miyasato; Lindsey A. Barner; Robert Serafin; Kevin W. Bishop; Weisi Xie; Adam K. Glaser; Eben L. Rosenthal; Lawrence D. True; Jonathan T. C. Liu (IEEE Trans. Biomed. Eng., 2023)

Triage of 3D pathology data via 2.5D multiple-instance learning to guide pathologist assessments. - Gan Gao; Andrew H. Song; Fiona Wang; David Brenes; Rui Wang; Sarah S. L. Chow; Kevin W. Bishop; Lawrence D. True; Faisal Mahmood 001; Jonathan T. C. Liu (CVPR Workshops, 2024)

AI-driven 3D Spatial Transcriptomics. - Cristina Almagro-Pérez; Andrew H. Song; Luca L. Weishaupt; Ahrong Kim; Guillaume Jaume; Drew F. K. Williamson; Konstantin Hemker; Ming Y. Lu; Kritika Singh; Bowen Chen; Long Phi Le; Alexander S. Baras; et al. (CoRR, 2025)

A Foundation Model for Spatial Proteomics. - Muhammad Shaban; Yuzhou Chang; Huaying Qiu; Yao Yu Yeo; Andrew H. Song; Guillaume Jaume; Yuchen Wang; Luca L. Weishaupt; Tong Ding; Anurag Vaidya; Abdallah Lamane; Daniel Shao; et al. (CoRR, 2025)