Multiple Trojan Horse Systems and Covert Channel Analysis. - Jonathan T. Trostle (CSFW, 1991)

Modelling a Fuzzy Time System. - Jonathan T. Trostle (J. Comput. Secur., 1993)

Applicability of Smart Cards to Network User Authentication. - Marjan Krajewski Jr.; John C. Chipchak; David A. Chodorow; Jonathan T. Trostle (Comput. Syst., 1994)

A flexible distributed authorization protocol. - Jonathan T. Trostle; B. Clifford Neuman (NDSS, 1996)

Timing Attacks Against Trusted Path. - Jonathan T. Trostle (S&P, 1998)

Implementation of Crossrealm Referral Handling in the MIT Kerberos Client. - Jonathan T. Trostle; Irina Kosinovsky; Michael M. Swift (NDSS, 2001)

Microsoft Windows 2000 Kerberos Change Password and Set Password Protocols. - Michael M. Swift; Jonathan T. Trostle; John Brezak (RFC, 2002)

Cryptographically Protected Prefixes for Location Privacy in IPv6. - Jonathan T. Trostle; Hosei Matsuoka; Muhammad Mukarram Bin Tariq; James Kempf; Toshiro Kawahara; Ravi Jain (Privacy Enhancing Technologies, 2004)

Techniques for improving the security and manageability of IPsec policy. - Jonathan T. Trostle; Bill Gossman (Int. J. Inf. Sec., 2005)

The lightweight key management protocol (LKMP). - Jonathan T. Trostle (Communication, Network, and Information Security, 2006)

Protecting Against Distributed Denial of Service (DDoS) Attacks Using Distributed Filtering. - Jonathan T. Trostle (SecureComm, 2006)

Efficient Computationally Private Information Retrieval From Anonymity or Trapdoor Groups. - Jonathan T. Trostle; Andy Parrish (IACR Cryptol. ePrint Arch., 2007)

New Side Channels Targeted at Passwords. - Albert Tannous; Jonathan T. Trostle; Mohamed Hassan; Stephen E. McLaughlin; Trent Jaeger (ACSAC, 2008)

Chosen Ciphertext Secure (CCS): Stateful Symmetric Key CCA Encryption with Minimal Ciphertext Expansion. - Jonathan T. Trostle (IACR Cryptol. ePrint Arch., 2013)

Cryptographically Protected Prefixes for Location Privacy in IPv6. - Jonathan T. Trostle; Hosei Matsuoka; James Kempf; Toshiro Kawahara; Ravi Jain (IACR Cryptol. ePrint Arch., 2013)

CMCC: Misuse Resistant Authenticated Encryption with Minimal Ciphertext Expansion. - Jonathan T. Trostle (Cryptogr., 2018)