Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals. - Yair Field; Noam Kaplan; Yvonne Fondufe-Mittendorf; Irene K. Moore; Eilon Sharon; Yaniv Lubling; Jonathan Widom; Eran Segal (PLoS Comput. Biol., 2008)

Preferentially Quantized Linker DNA Lengths in Saccharomyces cerevisiae. - Ji-Ping Wang; Yvonne Fondufe-Mittendorf; Liqun Xi; Guei-Feng Tsai; Eran Segal; Jonathan Widom (PLoS Comput. Biol., 2008)

Predicting nucleosome positioning using a duration Hidden Markov Model. - Liqun Xi; Yvonne Fondufe-Mittendorf; Lei Xia 001; Jared Flatow; Jonathan Widom; Ji-Ping Wang (BMC Bioinform., 2010)