jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences. - Yoon-Seong Jeon; Hwanwon Chung; Sunyoung Park; Inae Hur; Jae-Hak Lee; Jongsik Chun (Bioinform., 2005)

hc-OTU: A Fast and Accurate Method for Clustering Operational Taxonomic Units Based on Homopolymer Compaction. - Seunghyun Park 001; Hyun-Soo Choi; Byunghan Lee; Jongsik Chun; Joong-Ho Won; Sungroh Yoon (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

NASCUP: Nucleic Acid Sequence Classification by Universal Probability. - Sunyoung Kwon; Gyuwan Kim; Byunghan Lee; Jongsik Chun; Sungroh Yoon; Young-Han Kim 001 (IEEE Access, 2021)

AMDB: a database of animal gut microbial communities with manually curated metadata. - Junwon Yang; Jonghyun Park; Yeonjae Jung; Jongsik Chun (Nucleic Acids Res., 2022)

UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi. - Dongwook Kim; Cameron L. M. Gilchrist; Jongsik Chun; Martin Steinegger (Nucleic Acids Res., 2023)