SDPMOD: an automated comparative modeling server for small disulfide-bonded proteins. - Lesheng Kong; Bernett Teck Kwong Lee; Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan (Nucleic Acids Res., 2004)

Prediction of HLA-DQ3.2ß Ligands: evidence of multiple registers in class II binding peptides. - Joo Chuan Tong; Guanglan Zhang; Tin Wee Tan; J. Thomas August; Vladimir Brusic; Shoba Ranganathan (Bioinform., 2006)

Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6- associated Pemphigus vulgaris. - Joo Chuan Tong; Tin Wee Tan; Animesh A. Sinha; Shoba Ranganathan (BMC Bioinform., 2006)

Methods and protocols for prediction of immunogenic epitopes. - Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan (Briefings Bioinform., 2007)

In silico grouping of peptide/HLA class I complexes using structural interaction characteristics. - Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan (Bioinform., 2007)

AllerTool: a web server for predicting allergenicity and allergic cross-reactivity in proteins. - Zong Hong Zhang; Judice L. Y. Koh; Guanglan Zhang; Khar Heng Choo; Martti T. Tammi; Joo Chuan Tong (Bioinform., 2007)

Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage. - Khar Heng Choo; Joo Chuan Tong; Shoba Ranganathan (BMC Bioinform., 2008)

The value of position-specific scoring matrices for assessment of protein allegenicity. - Shen Jean Lim; Joo Chuan Tong; Fook Tim Chew; Martti T. Tammi (BMC Bioinform., 2008)

Recent advances in computer-aided drug design. - Chun Meng Song; Shen Jean Lim; Joo Chuan Tong (Briefings Bioinform., 2009)

Allergen Atlas: a comprehensive knowledge center and analysis resource for allergen information. - Joo Chuan Tong; Shen Jean Lim; Hon Cheng Muh; Fook Tim Chew; Martti T. Tammi (Bioinform., 2009)

Mining mutation chains in biological sequences. - Chang Sheng; Wynne Hsu; Mong-Li Lee; Joo Chuan Tong; See-Kiong Ng (ICDE, 2010)

MPID-T2: a database for sequence-structure-function analyses of pMHC and TR/pMHC structures. - Javed Mohammed Khan; Harish Reddy Cheruku; Joo Chuan Tong; Shoba Ranganathan (Bioinform., 2011)

Psychographic Profiling for Use in Assistive Social Robots for the Elderly. - Kayo Sakamoto; Sue-Ann Lee Ching Fern; Lin Han; Joo Chuan Tong (ICIRA (2), 2016)

Immunoinformatics Databases. - Christine L. P. Eng; Tin Wee Tan; Joo Chuan Tong (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)