Distributed Replica-Exchange Simulations on Production Environments Using SAGA and Migol. - André Luckow; Shantenu Jha; Joohyun Kim 001; André Merzky; Bettina Schnor (eScience, 2008)

Developing Scientific Applications with Loosely-Coupled Sub-tasks. - Shantenu Jha; Yaakoub El Khamra; Joohyun Kim 001 (ICCS (1), 2009)

Efficient Runtime Environment for Coupled Multi-physics Simulations: Dynamic Resource Allocation and Load-Balancing. - Soon-Heum Ko; Nayong Kim; Joohyun Kim 001; Abhinav Thota; Shantenu Jha (CCGRID, 2010)

Exploring the RNA folding energy landscape using scalable distributed cyberinfrastructure. - Joohyun Kim 001; Wei Huang; Sharath Maddineni; Fareed Aboul-Ela; Shantenu Jha (HPDC, 2010)

Building gateways for life-science applications using the dynamic application runtime environment (DARE) framework. - Joohyun Kim 001; Sharath Maddineni; Shantenu Jha (TG, 2011)

Energy landscape analysis for regulatory RNA finding using scalable distributed cyberinfrastructure. - Joohyun Kim 001; Wei Huang; Sharath Maddineni; Fareed Aboul-Ela; Shantenu Jha (Concurr. Comput. Pract. Exp., 2011)

Distributed Application Runtime Environment (DARE): A Standards-based Middleware Framework for Science-Gateways. - Sharath Maddineni; Joohyun Kim 001; Yaakoub El Khamra; Shantenu Jha (J. Grid Comput., 2012)

The Impact of a Ligand Binding on Strand Migration in the SAM-I Riboswitch. - Wei Huang; Joohyun Kim 001; Shantenu Jha; Fareed Aboul-Ela (PLoS Comput. Biol., 2013)

MapReduce-Based RESTMD: Enabling Large-Scale Sampling Tasks with Distributed HPC Systems. - Praveenkumar Kondikoppa; Richard Platania; Seung-Jong Park; Tom Keyes; Jaegil Kim; Nayong Kim; Joohyun Kim 001; Shuju Bai (IWSG, 2014)

Advancing next-generation sequencing data analytics with scalable distributed infrastructure. - Joohyun Kim 001; Sharath Maddineni; Shantenu Jha (Concurr. Comput. Pract. Exp., 2014)

Enabling Large-Scale Biomolecular Conformation Search with Replica Exchange Statistical Temperature Molecular Dynamics (RESTMD) over HPC and Cloud Computing Resources. - Nayong Kim; Richard Platania; Wei Huang; Chris Knight 001; Tom Keyes; Seung-Jong Park; Joohyun Kim 001 (AINA Workshops, 2015)

A Scalable Pipeline for Transcriptome Profiling Tasks with On-Demand Computing Clouds. - Shayan Shams; Nayong Kim; Xiandong Meng; Ming Tai Ha; Shantenu Jha; Zhong Wang 003; Joohyun Kim 001 (IPDPS Workshops, 2016)

Hadoop-based replica exchange over heterogeneous distributed cyberinfrastructures. - Richard Platania; Shayan Shams; Chui-Hui Chiu; Nayong Kim; Joohyun Kim 001; Seung-Jong Park (Concurr. Comput. Pract. Exp., 2017)

A Distributed Semi-Supervised Platform for DNase-Seq Data Analytics using Deep Generative Convolutional Networks. - Shayan Shams; Richard Platania; Joohyun Kim 001; Jian Zhang 004; Kisung Lee; Seungwon Yang; Seung-Jong Park (BCB, 2018)

Deep Generative Breast Cancer Screening and Diagnosis. - Shayan Shams; Richard Platania; Jian Zhang 004; Joohyun Kim 001; Seung-Jong Park (MICCAI (2), 2018)

Developing a Meta Framework for Key-Value Memory Networks on HPC Clusters. - Choonhan Youn; Arghya Kusum Das; Seungwon Yang; Joohyun Kim 001 (PEARC, 2019)

Fighting for Information Credibility: AnEnd-to-End Framework to Identify FakeNews during Natural Disasters. - Dipak Kumar Singh; Shayan Shams; Joohyun Kim 001; Seung-Jong Park; Seungwon Yang (ISCRAM, 2020)