Fast Conversion of Dynamic B-Spline Curves into a Set of Power Form Polynomial Curves. - Deok-Soo Kim; Joonghyun Ryu; Hyun-Chan Lee; Hayong Shin; Joonyoung Park; Taeboom Jang (GMP, 2000)

Robust and Fast Algorithm for a Circle Set Voronoi Diagram in a Plane. - Deok-Soo Kim; Donguk Kim 001; Kokichi Sugihara; Joonghyun Ryu (International Conference on Computational Science (1), 2001)

Apollonius Tenth Problem as a Point Location Problem. - Deok-Soo Kim; Donguk Kim 001; Kokichi Sugihara; Joonghyun Ryu (International Conference on Computational Science (1), 2001)

Transformation of a Dynamic B-Spline Curve into Piecewise Power Basis Representation. - Joonghyun Ryu; Youngsong Cho; Deok-Soo Kim (International Conference on Computational Science (2), 2002)

The conversion of a dynamic B-spline curve into piecewise polynomials in power form. - Deok-Soo Kim; Joonghyun Ryu; Hyun-Chan Lee; Hayong Shin (Comput. Aided Des., 2002)

Visualization and Analysis of Protein Structures Using Euclidean Voronoi Diagram of Atoms. - Deok-Soo Kim; Donguk Kim 001; Youngsong Cho; Joonghyun Ryu; Cheol-Hyung Cho; Joon Young Park; Hyun-Chan Lee (ICCSA (3), 2005)

The B-shape and B-complex for three-dimensional spheres. - Jeongyeon Seo; Youngsong Cho; Cheol-Hyung Cho; Donguk Kim 001; Joonghyun Ryu; Deok-Soo Kim (ISVD, 2006)

Three-dimensional beta shapes. - Deok-Soo Kim; Jeongyeon Seo; Donguk Kim 001; Joonghyun Ryu; Cheol-Hyung Cho (Comput. Aided Des., 2006)

Connolly Surface on an Atomic Structure via Voronoi Diagram of Atoms. - Joonghyun Ryu; Rhohun Park; Deok-Soo Kim (J. Comput. Sci. Technol., 2006)

Multi-Resolution Protein Model. - Deok-Soo Kim; Bohyung Lee; Chung In Won; Donguk Kim 001; Joonghyun Ryu; Youngsong Cho; Chong-Min Kim; Sunghoon Lee; Jonghwa Bhak (ICCSA (2), 2007)

Real-Time Triangulation of Molecular Surfaces. - Joonghyun Ryu; Rhohun Park; Jeongyeon Seo; Chong-Min Kim; Hyun-Chan Lee; Deok-Soo Kim (ICCSA (1), 2007)

beta-shape Based Computation of Blending Surfaces on a Molecule. - Joonghyun Ryu; Rhohun Park; Youngsong Cho; Jeongyeon Seo; Deok-Soo Kim (ISVD, 2007)

Molecular surfaces on proteins via beta shapes. - Joonghyun Ryu; Rhohun Park; Deok-Soo Kim (Comput. Aided Des., 2007)

Upper and lower bounds of op-code probabilities for Edgebreaker. - Cheol-Hyung Cho; Deok-Soo Kim; Youngsong Cho; Joonghyun Ryu (Int. J. Comput. Sci. Eng., 2007)

The beta-Shape and beta-Complex for Analysis of Molecular Structures. - Deok-Soo Kim; Jeongyeon Seo; Donguk Kim 001; Youngsong Cho; Joonghyun Ryu (Generalized Voronoi Diagram, 2008)

Protein-Ligand Docking Based on ss-shape. - Chong-Min Kim; Chung In Won; Joonghyun Ryu; Jae-Kwan Kim 001; Jong Bhak; Deok-Soo Kim (ISVD, 2009)

Triangulation of molecular surfaces. - Joonghyun Ryu; Youngsong Cho; Deok-Soo Kim (Comput. Aided Des., 2009)

Topologies of surfaces on molecules and their computation in O(n) time. - Deok-Soo Kim; Youngsong Cho; Joonghyun Ryu; Chong-Min Kim (Comput. Aided Des., 2010)

Three-dimensional beta-shapes and beta-complexes via quasi-triangulation. - Deok-Soo Kim; Youngsong Cho; Kokichi Sugihara; Joonghyun Ryu; Donguk Kim 001 (Comput. Aided Des., 2010)

Protein-Ligand Docking Based on Beta-Shape. - Chong-Min Kim; Chung In Won; Jae-Kwan Kim 001; Joonghyun Ryu; Jong Bhak; Deok-Soo Kim (Trans. Comput. Sci., 2010)

BetaMol: Molecular Modeling, Analysis, and Visualization Software Based on the Beta-Complex Derived from the Voronoi Diagram. - Youngsong Cho; Jae-Kwan Kim 001; Chung In Won; Joonghyun Ryu; Chong-Min Kim; Deok-Soo Kim (ISVD, 2011)

QTF: Quasi-triangulation file format. - Deok-Soo Kim; Youngsong Cho; Jae-Kwan Kim 001; Joonghyun Ryu (Comput. Aided Des., 2012)

Beta-decomposition for the volume and area of the union of three-dimensional balls and their offsets. - Deok-Soo Kim; Joonghyun Ryu; Hayong Shin; Youngsong Cho (J. Comput. Chem., 2012)

Anomalies in quasi-triangulations and beta-complexes of spherical atoms in molecules. - Deok-Soo Kim; Youngsong Cho; Joonghyun Ryu; Jae-Kwan Kim 001; Donguk Kim 001 (Comput. Aided Des., 2013)

Protein structure optimization by side-chain positioning via beta-complex. - Joonghyun Ryu; Deok-Soo Kim (J. Glob. Optim., 2013)

Molecular Geometry and BULL! - Youngsong Cho; Jae-Kwan Kim 001; Joonghyun Ryu; Mokwon Lee; Jehyun Cha; Chanyoung Song; Deok-Soo Kim (CW, 2014)

BULL! - The Molecular Geometry Engine Based on Voronoi Diagram, Quasi-Triangulation, and Beta-Complex. - Deok-Soo Kim; Youngsong Cho; Jae-Kwan Kim 001; Joonghyun Ryu; Mokwon Lee; Jehyun Cha; Chanyoung Song (ICMS, 2014)

BetaSCP2: A Program for the Optimal Prediction of Side-Chains in Proteins. - Joonghyun Ryu; Mokwon Lee; Jehyun Cha; Chanyoung Song; Deok-Soo Kim (ICMS, 2014)

BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex. - Jeongyeon Seo; Jae-Kwan Kim 001; Joonghyun Ryu; Carlile Lavor; Antonio Mucherino; Deok-Soo Kim (Trans. Comput. Sci., 2014)

BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization. - Joonghyun Ryu; Mokwon Lee; Jehyun Cha; Roman A. Laskowski; Seong Eon Ryu; Deok-Soo Kim (Nucleic Acids Res., 2016)

Support-Free Hollowing for 3D Printing via Voronoi Diagram of Ellipses. - Mokwon Lee; Qing Fang; Joonghyun Ryu; Ligang Liu 001; Deok-Soo Kim (CoRR, 2017)

Fused Segmentation of Geometric Models for Myocardium and Coronary Artery via Medial Axis. - Jehyun Cha; Joonghyun Ryu; Jin-Ho Choi; Deok-Soo Kim (CoRR, 2017)

Support-free hollowing for 3D printing via Voronoi diagram of ellipses. - Mokwon Lee; Qing Fang; Youngsong Cho; Joonghyun Ryu; Ligang Liu 001; Deok-Soo Kim (Comput. Aided Des., 2018)

QuickhullDisk: A faster convex hull algorithm for disks. - Nguyen Kieu Linh; Chanyoung Song; Joonghyun Ryu; Thanh An Phan; Nam-Dung Hoang; Deok-Soo Kim (Appl. Math. Comput., 2019)

VOROPACK-D: Real-time disk packing algorithm using Voronoi diagram. - Joonghyun Ryu; Mokwon Lee; Donguk Kim 001; Josef Kallrath; Kokichi Sugihara; Deok-Soo Kim (Appl. Math. Comput., 2020)

MGOS: A library for molecular geometry and its operating system. - Deok-Soo Kim; Joonghyun Ryu; Youngsong Cho; Mokwon Lee; Jehyun Cha; Chanyoung Song; Sangwha Kim; Roman A. Laskowski; Kokichi Sugihara; Jong Bhak; Seong Eon Ryu (Comput. Phys. Commun., 2020)

Medial-ABC: an algorithm for the correspondence between myocardium and coronary artery mesh models based on the medial axis of coronary artery. - Jehyun Cha; Joonghyun Ryu; Jin-Ho Choi; Deok-Soo Kim (J. Comput. Des. Eng., 2020)

Near optimal minimal convex hulls of disks. - Josef Kallrath; Joonghyun Ryu; Chanyoung Song; Mokwon Lee; Deok-Soo Kim (J. Glob. Optim., 2021)