Online feedback control of functional electrical stimulation using dorsal root ganglia recordings. - Matthew J. Bauman; Tim M. Bruns; Joost B. Wagenaar; Robert A. Gaunt; Douglas J. Weber (EMBC, 2011)

Looking at Everything in Context. - Zachary G. Ives; Zhepeng Yan; Nan Zheng; Brian Litt; Joost B. Wagenaar (CIDR, 2015)

Data integration: Combined imaging and electrophysiology data in the cloud. - Lohith G. Kini; Kathryn A. Davis; Joost B. Wagenaar (NeuroImage, 2016)

IRIS: A Modular Platform for Continuous Monitoring and Caretaker Notification in the Intensive Care Unit. - Steven Baldassano; Shawniqua Williams Roberson; Ramani Balu; Brittany Scheid; John M. Bernabei; Jay Pathmanathan; Brian Oommen; Damien Leri; Javier R. Echauz; Michael Gelfand; Paulomi Kadakia Bhalla; Chloe E. Hill; et al. (IEEE J. Biomed. Health Informatics, 2020)

A comparative study of GP-based and state-of-the-art classifiers on a synthetic machine learning benchmark. - Patryk Orzechowski; Pawel Renc; William G. La Cava; Jason H. Moore; Arkadiusz Sitek; Jaroslaw Was; Joost B. Wagenaar (GECCO Companion, 2022)

Benchmarking AutoML algorithms on a collection of synthetic classification problems. - Pedro Henrique Ribeiro; Patryk Orzechowski; Joost B. Wagenaar; Jason H. Moore (CoRR, 2022)

Applying autonomous hybrid agent-based computing to difficult optimization problems. - Mateusz Godzik; Jacek Dajda; Marek Kisiel-Dorohinicki; Aleksander Byrski; Leszek Rutkowski; Patryk Orzechowski; Joost B. Wagenaar; Jason H. Moore (J. Comput. Sci., 2022)

QOT: Quantized Optimal Transport for sample-level distance matrix in single-cell omics. - Zexuan Wang; Qipeng Zhan; Shu Yang 009; Shizhuo Mu; Jiong Chen; Sumita Garai; Patryk Orzechowski; Joost B. Wagenaar; Li Shen 001 (Briefings Bioinform., 2024)

Pennsieve: A Collaborative Platform for Translational Neuroscience and Beyond. - Zack Goldblum; Zhongchuan Xu; Haoer Shi; Patryk Orzechowski; Jamaal Spence; Kathryn A. Davis; Brian Litt; Nishant Sinha; Joost B. Wagenaar (CoRR, 2024)

Clustering Alzheimer's Disease Subtypes via Similarity Learning and Graph Diffusion. - Tianyi Wei; Shu Yang 009; Davoud Ataee Tarzanagh; Jingxuan Bao; Jia Xu; Patryk Orzechowski; Joost B. Wagenaar; Qi Long; Li Shen 001 (CoRR, 2024)

MentalChat16K: A Benchmark Dataset for Conversational Mental Health Assistance. - Jia Xu; Tianyi Wei; Bojian Hou; Patryk Orzechowski; Shu Yang 009; Ruochen Jin; Rachael Paulbeck; Joost B. Wagenaar; George Demiris; Li Shen 001 (CoRR, 2025)