EMU: reconfigurable graphical user interfaces for Micro-Manager. - Joran Deschamps; Jonas Ries (BMC Bioinform., 2020)

LABKIT: Labeling and Segmentation Toolkit for Big Image Data. - Matthias Arzt; Joran Deschamps; Christopher Schmied; Tobias Pietzsch; Deborah Schmidt; Pavel Tomancak; Robert Haase 001; Florian Jug (Frontiers Comput. Sci., 2022)

Better research software tools to elevate the rate of scientific discovery or why we need to invest in research software engineering. - Joran Deschamps; Damian Dalle Nogare; Florian Jug (Frontiers Bioinform., 2023)

MicroSSIM: Improved Structural Similarity for Comparing Microscopy Data. - Ashesh Ashesh; Joran Deschamps; Florian Jug (ECCV Workshops (16), 2024)