Integration of EGA secure data access into Galaxy. - Youri Hoogstrate; Chao Zhang; Alexander Senf; Jochem Bijlard; Saskia D. Hiltemann; David van Enckevort; Susanna Repo; Jaap Heringa; Guido Jenster; Remond J. A. Fijneman; Jan-Willem Boiten; Gerrit A. Meijer; et al. (F1000Research, 2016)

Accelerating FaST-LMM for Epistasis Tests. - Héctor Martínez 002; Sergio Barrachina 001; Maribel Castillo; Enrique S. Quintana-Ortí; Jordi Rambla De Argila; Xavier Farré; Arcadi Navarro (ICA3PP, 2017)

Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data. - Chao Zhang; Jochem Bijlard; Christine Staiger; Serena A. Scollen; David van Enckevort; Youri Hoogstrate; Alexander Senf; Saskia D. Hiltemann; Susanna Repo; Wibo Pipping; Mariska Bierkens; Stefan Payralbe; et al. (F1000Research, 2017)

FaST-LMM for Two-Way Epistasis Tests on High-Performance Clusters. - Héctor Martínez 002; Sergio Barrachina 001; Maribel Castillo; Enrique S. Quintana-Ortí; Jordi Rambla De Argila; Xavier Farré; Arcadi Navarro (J. Comput. Biol., 2018)

European Genome-Phenome Archive (EGA) - Granular Solutions for the Next 10 Years. - Dietmar Fernández-Orth; Audald Lloret-Villas; Jordi Rambla De Argila (CBMS, 2019)

iASiS: Towards Heterogeneous Big Data Analysis for Personalized Medicine. - Anastasia Krithara; Fotis Aisopos; Vassiliki Rentoumi; Anastasios Nentidis; Konstantinos Bougiatiotis; Maria-Esther Vidal; Ernestina Menasalvas; Alejandro Rodríguez González; Eleftherios Samaras; Peter Garrard; Maria Torrente; Mariano Provencio Pulla; et al. (CBMS, 2019)

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. - Rachel Drysdale; Charles E. Cook; Robert Petryszak; Vivienne Baillie Gerritsen; Mary Barlow; Elisabeth Gasteiger; Franziska Gruhl; Jürgen Haas; Jerry Lanfear; Rodrigo Lopez; Nicole Redaschi; Heinz Stockinger; et al. (Bioinform., 2020)

Genome-phenome explorer (GePhEx): a tool for the visualization and interpretation of phenotypic relationships supported by genetic evidence. - Xavier Farré; Nino Spataro; Frédéric Haziza; Jordi Rambla; Arcadi Navarro (Bioinform., 2020)

A quality control portal for sequencing data deposited at the European genome-phenome archive. - Dietmar Fernández-Orth; Manuel Rueda; Babita Singh; Mauricio Moldes; Aina Jene; Marta Ferri; Claudia Vasallo; Lauren A. Fromont; Arcadi Navarro; Jordi Rambla (Briefings Bioinform., 2022)

Beacon v2 Reference Implementation: a toolkit to enable federated sharing of genomic and phenotypic data. - Manuel Rueda; Roberto Ariosa; Mauricio Moldes; Jordi Rambla (Bioinform., 2022)

The European Genome-phenome Archive in 2021. - Mallory Ann Freeberg; Lauren A. Fromont; Teresa D'altri; Anna Foix Romero; Jorge Izquierdo Ciges; Aina Jene; Giselle Kerry; Mauricio Moldes; Roberto Ariosa; Silvia Bahena; Daniel Barrowdale; Marcos Casado Barbero; et al. (Nucleic Acids Res., 2022)

Consent Codes: Maintaining Consent in an Ever-expanding Open Science Ecosystem. - Stephanie O. M. Dyke; Kathleen Connor; Victoria Nembaware; Nchangwi S. Munung; Kathy Reinold; Giselle Kerry; Mamana Mbiyavanga; Lyndon Zass; Mauricio Moldes; Samir Das; John Mike Davis; Jordi Rambla De Argila; et al. (Neuroinformatics, 2023)

RNAget: an API to securely retrieve RNA quantifications. - Sean Upchurch; Emilio Palumbo; Jeremy Adams; David Bujold; Guillaume Bourque; Jared Nedzel; Keenan Graham; Meenakshi S. Kagda; Pedro Assis; Benjamin C. Hitz; Emilio Righi; Roderic Guigó; et al. (Bioinform., 2023)

AskBeacon - Performing genomic data exchange and analytics with natural language. - Anuradha Wickramarachchi; Shakila Tonni; Sonali Majumdar; Sarvnaz Karimi; Sulev Kõks; Brendan Hosking; Jordi Rambla; Natalie A. Twine; Yatish Jain; Denis C. Bauer (CoRR, 2024)

Twelve quick tips for deploying a Beacon. - Lauren A. Fromont; Mauricio Moldes; Michael Baudis; Anthony J. Brookes; Arcadi Navarro; Jordi Rambla (PLoS Comput. Biol., 2024)