Simulation of the Notch Genetic Network during Early Development of the Vertebrate Inner Ear. - Adrián López García de Lomana; Gina Abelló; Berta Alsina; Jordi Villà-Freixa (Spanish Bioinformatics Conference, 2004)

Framework-based design of a new all-purpose molecular simulation application: The Adun simulator. - Michael A. Johnston; Ignacio Fdez. Galván; Jordi Villà-Freixa (J. Comput. Chem., 2005)

Enabling Data Sharing and Collaboration in Complex Systems Applications. - Michael A. Johnston; Jordi Villà-Freixa (GCCB, 2006)

Optimal Experimental Design in the Modelling of Pattern Formation. - Adrián López García de Lomana; Àlex Gómez-Garrido; David Sportouch; Jordi Villà-Freixa (ICCS (1), 2008)

Simulation methods with extended stability for stiff biochemical Kinetics. - Pau Rué; Jordi Villà-Freixa; Kevin Burrage (BMC Syst. Biol., 2010)

Statistical Analysis of Global Connectivity and Activity Distributions in Cellular Networks. - Adrián López García de Lomana; Qasim K. Beg; Gianni De Fabritiis; Jordi Villà-Freixa (J. Comput. Biol., 2010)

Knowledge management for systems biology a general and visually driven framework applied to translational medicine. - Dieter Maier; Wenzel Kalus; Martin Wolff; Susana G. Kalko; Josep Roca; Igor Marín de Mas; Nil Turan; Marta Cascante; Francesco Falciani; Miguel Hernandez; Jordi Villà-Freixa; Sascha Losko (BMC Syst. Biol., 2011)

New Model of Cystic Fibrosis Transmembrane Conductance Regulator Proposes Active Channel-like Conformation. - James A. R. Dalton; Ori Kalid; Maya Schushan; Nir Ben-Tal; Jordi Villà-Freixa (J. Chem. Inf. Model., 2012)

Population Ageing and ICT - An Exploratory Review of Technology Innovation trough Digital Applications. - Jordi Solé-Casals; Mihaela Vancea; Jaume Miquel March; Jordi Villà-Freixa (BIOSIGNALS, 2014)

SBMOpenMM: A Builder of Structure-Based Models for OpenMM. - Martin Floor; Kengjie Li; Miquel Estévez-Gay; Luis Agulló; Pau M. Muñoz-Torres; Jenn K. Hwang; Sílvia Osuna; Jordi Villà-Freixa (J. Chem. Inf. Model., 2021)