Network Properties for Ranking Predicted miRNA Targets in Breast Cancer. - Jörg Linde; Björn Olsson; Zelmina Lubovac (Adv. Bioinformatics, 2009)

Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells. - Jörg Linde; Duncan Wilson; Bernhard Hube; Reinhard Guthke (BMC Syst. Biol., 2010)

Towards Automatic Pathway Generation from Biological Full-Text Publications. - Ekaterina Buyko; Jörg Linde; Steffen Priebe; Udo Hahn (IDA, 2011)

Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach. - Jörg Linde; Peter Hortschansky; Eugen Fazius; Axel A. Brakhage; Reinhard Guthke; Hubertus Haas (BMC Syst. Biol., 2012)

The extended TILAR approach: a novel tool for dynamic modeling of the transcription factor network regulating the adaption to in vitro cultivation of murine hepatocytes. - Sebastian Vlaic; Wolfgang Schmidt-Heck; Madlen Matz-Soja; Eugenia Marbach; Jörg Linde; Anke Meyer-Baese; Sebastian Zellmer; Reinhard Guthke; Rolf Gebhardt (BMC Syst. Biol., 2012)

FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species. - Steffen Priebe; Christian Kreisel; Fabian Horn; Reinhard Guthke; Jörg Linde (Bioinform., 2015)

LASSIM - A network inference toolbox for genome-wide mechanistic modeling. - Rasmus Magnusson; Guido Pio Mariotti; Mattias Köpsén; William Lövfors; Danuta R. Gawel; Rebecka Jörnsten; Jörg Linde; Torbjörn E. M. Nordling; Elin Nyman; Sylvie Schulze; Colm E. Nestor; Huan Zhang; et al. (PLoS Comput. Biol., 2017)

Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin. - Theresia Conrad; Olaf Kniemeyer; Sebastian Henkel; Thomas Krüger; D. J. Mattern; Vito Valiante; Reinhard Guthke; I. D. Jacobsen; Axel A. Brakhage; Sebastian Vlaic; Jörg Linde (BMC Syst. Biol., 2018)