JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes. - Michael Richter; Thierry Lombardot; Ivaylo Kostadinov; Renzo Kottmann; Melissa Beth Duhaime; Jörg Peplies; Frank Oliver Glöckner (BMC Bioinform., 2008)

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes. - Elmar Pruesse; Jörg Peplies; Frank Oliver Glöckner (Bioinform., 2012)

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. - Christian Quast; Elmar Pruesse; Pelin Yilmaz; Jan Gerken; Timmy Schweer; Pablo Yarza; Jörg Peplies; Frank Oliver Glöckner (Nucleic Acids Res., 2013)

The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks. - Pelin Yilmaz; Laura Wegener Parfrey; Pablo Yarza; Jan Gerken; Elmar Pruesse; Christian Quast; Timmy Schweer; Jörg Peplies; Wolfgang Ludwig; Frank Oliver Glöckner (Nucleic Acids Res., 2014)

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. - Michael Richter; Ramon Rosselló-Mora; Frank Oliver Glöckner; Jörg Peplies (Bioinform., 2016)