Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics. - Ulrike Mückstein; Hakim Tafer; Stephan H. Bernhart; Maribel Hernandez-Rosales; Jörg Vogel 002; Peter F. Stadler; Ivo L. Hofacker (BIRD, 2008)

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures. - Steve Hoffmann; Christian Otto; Stefan Kurtz; Cynthia M. Sharma; Philipp Khaitovich; Jörg Vogel 002; Peter F. Stadler; Jörg Hackermüller (PLoS Comput. Biol., 2009)

The primary transcriptome of the major human pathogen Helicobacter pylori. - Cynthia M. Sharma; Steve Hoffmann; Fabien Darfeuille; Jérémy Reignier; Sven Findeiß; Alexandra Sittka; Sandrine Chabas; Kristin Reiche; Jörg Hackermüller; Richard Reinhardt; Peter F. Stadler; Jörg Vogel 002 (Nat., 2010)

READemption - a tool for the computational analysis of deep-sequencing-based transcriptome data. - Konrad U. Förstner; Jörg Vogel 002; Cynthia M. Sharma (Bioinform., 2014)