PangeBlocks: customized construction of pangenome graphs via maximal blocks. - Jorge Avila Cartes; Paola Bonizzoni; Simone Ciccolella; Gianluca Della Vedova; Luca Denti (BMC Bioinform., 2024)

Differential analysis of alternative splicing events in gene regions using residual neural networks. - Simone Ciccolella; Luca Denti; Jorge Avila Cartes; Gianluca Della Vedova; Yuri Pirola; Raffaella Rizzi; Paola Bonizzoni (Neural Comput. Appl., 2025)