Fast inference of ill-posed problems within a convex space. - Jorge Fernandez-de-Cossío-Diaz; Roberto Mulet (CoRR, 2016)

Characterizing steady states of genome-scale metabolic networks in continuous cell cultures. - Jorge Fernandez-de-Cossío-Diaz; Kalet Leon; Roberto Mulet (PLoS Comput. Biol., 2017)

Maximum entropy and population heterogeneity in continuous cell cultures. - Jorge Fernandez-de-Cossío-Diaz; Roberto Mulet (PLoS Comput. Biol., 2019)

Disentangling representations in Restricted Boltzmann Machines without adversaries. - Jorge Fernandez-de-Cossío-Diaz; Simona Cocco; Rémi Monasson (CoRR, 2022)

Accelerated Sampling with Stacked Restricted Boltzmann Machines. - Jorge Fernandez-de-Cossío-Diaz; Clément Roussel; Simona Cocco; Rémi Monasson (ICLR, 2024)

Inference and design of antibody specificity: From experiments to models and back. - Jorge Fernandez-de-Cossío-Diaz; Guido Uguzzoni; Kévin Ricard; Francesca Anselmi; Clément Nizak; Andrea Pagnani; Olivier Rivoire (PLoS Comput. Biol., 2024)

Inference of annealed protein fitness landscapes with AnnealDCA. - Luca Sesta; Andrea Pagnani; Jorge Fernandez-de-Cossío-Diaz; Guido Uguzzoni (PLoS Comput. Biol., 2024)

Unsupervised modeling of mutational landscapes of adeno-associated viruses viability. - Matteo De Leonardis; Jorge Fernandez-de-Cossío-Diaz; Guido Uguzzoni; Andrea Pagnani (BMC Bioinform., 2024)