A Parallel Numerical Library for UPC. - Jorge González-Domínguez; María J. Martín; Guillermo L. Taboada; Juan Touriño; Ramon Doallo; Andrés Gómez 002 (Euro-Par, 2009)

Servet: A benchmark suite for autotuning on multicore clusters. - Jorge González-Domínguez; Guillermo L. Taboada; Basilio B. Fraguela; María J. Martín; Juan Touriño (IPDPS, 2010)

Dense Triangular Solvers on Multicore Clusters using UPC. - Jorge González-Domínguez; María J. Martín; Guillermo L. Taboada; Juan Touriño (ICCS, 2011)

Design and Performance Issues of Cholesky and LU Solvers Using UPCBLAS. - Jorge González-Domínguez; Osni A. Marques; María J. Martín; Guillermo L. Taboada; Juan Touriño (ISPA, 2012)

Communication avoiding and overlapping for numerical linear algebra. - Evangelos Georganas; Jorge González-Domínguez; Edgar Solomonik; Yili Zheng; Juan Touriño; Katherine A. Yelick (SC, 2012)

Automatic mapping of parallel applications on multicore architectures using the Servet benchmark suite. - Jorge González-Domínguez; Guillermo L. Taboada; Basilio B. Fraguela; María J. Martín; Juan Touriño (Comput. Electr. Eng., 2012)

UPCBLAS: a library for parallel matrix computations in Unified Parallel C. - Jorge González-Domínguez; María J. Martín; Guillermo L. Taboada; Juan Touriño; Ramon Doallo; Damián A. Mallón; Brian Wibecan (Concurr. Comput. Pract. Exp., 2012)

The Servet 3.0 benchmark suite: Characterization of network performance degradation. - Jorge González-Domínguez; María J. Martín; Guillermo L. Taboada; Roberto R. Expósito; Juan Touriño (Comput. Electr. Eng., 2013)

Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform. - Roberto R. Expósito; Guillermo L. Taboada; Sabela Ramos; Jorge González-Domínguez; Juan Touriño; Ramon Doallo (J. Grid Comput., 2013)

Performance evaluation of sparse matrix products in UPC. - Jorge González-Domínguez; Óscar García-López; Guillermo L. Taboada; María J. Martín; Juan Touriño (J. Supercomput., 2013)

UPC++ for bioinformatics: A case study using genome-wide association studies. - Jan Christian Kässens; Jorge González-Domínguez; Lars Wienbrandt; Bertil Schmidt (CLUSTER, 2014)

Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS. - Jorge González-Domínguez; Bertil Schmidt; Jan Christian Kässens; Lars Wienbrandt (Euro-Par, 2014)

FPGA-based Acceleration of Detecting Statistical Epistasis in GWAS. - Lars Wienbrandt; Jan Christian Kässens; Jorge González-Domínguez; Bertil Schmidt; David Ellinghaus; Manfred Schimmler (ICCS, 2014)

Analyzing the Energy Efficiency of the Memory Subsystem in Multicore Processors. - Sandra Catalán; Jorge González-Domínguez; Rafael Mayo 002; Enrique S. Quintana-Ortí (ISPA, 2014)

Scalable PGAS collective operations in NUMA clusters. - Damián A. Mallón; Guillermo L. Taboada; Carlos Teijeiro; Jorge González-Domínguez; Andrés Gómez 002; Brian Wibecan (Clust. Comput., 2014)

Constructing Performance Models for Dense Linear Algebra Algorithms on Cray XE Systems. - Jorge González-Domínguez; Evangelos Georganas; Yili Zheng; María J. Martín (CoRR, 2014)

A 2D algorithm with asymmetric workload for the UPC conjugate gradient method. - Jorge González-Domínguez; Osni A. Marques; María J. Martín; Juan Touriño (J. Supercomput., 2014)

Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model. - Jorge González-Domínguez; Jan Christian Kässens; Lars Wienbrandt; Bertil Schmidt (Int. J. High Perform. Comput. Appl., 2015)

GPU-accelerated exhaustive search for third-order epistatic interactions in case-control studies. - Jorge González-Domínguez; Bertil Schmidt (J. Comput. Sci., 2015)

High-speed exhaustive 3-locus interaction epistasis analysis on FPGAs. - Jan Christian Kässens; Lars Wienbrandt; Jorge González-Domínguez; Bertil Schmidt; Manfred Schimmler (J. Comput. Sci., 2015)

Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems. - Jorge González-Domínguez; Lars Wienbrandt; Jan Christian Kässens; David Ellinghaus; Manfred Schimmler; Bertil Schmidt (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Combining GPU and FPGA technology for efficient exhaustive interaction analysis in GWAS. - Jan Christian Kässens; Lars Wienbrandt; Manfred Schimmler; Jorge González-Domínguez; Bertil Schmidt (ASAP, 2016)

Ultra-Fast Detection of Higher-Order Epistatic Interactions on GPUs. - Daniel Jünger; Christian Hundt 002; Jorge González-Domínguez; Bertil Schmidt (Euro-Par Workshops, 2016)

Acceleration of Tear Film Map Definition on Multicore Systems. - Jorge González-Domínguez; Beatriz Remeseiro; María J. Martín (ICCS, 2016)

ParDRe: faster parallel duplicated reads removal tool for sequencing studies. - Jorge González-Domínguez; Bertil Schmidt (Bioinform., 2016)

MSAProbs-MPI: parallel multiple sequence aligner for distributed-memory systems. - Jorge González-Domínguez; Yongchao Liu; Juan Touriño; Bertil Schmidt (Bioinform., 2016)

Multithreaded and Spark parallelization of feature selection filters. - Carlos Eiras-Franco; Verónica Bolón-Canedo; Sabela Ramos; Jorge González-Domínguez; Amparo Alonso-Betanzos; Juan Touriño (J. Comput. Sci., 2016)

Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures. - Jorge González-Domínguez; Sabela Ramos; Juan Touriño; Bertil Schmidt (IEEE Trans. Parallel Distributed Syst., 2016)

Fast Parallel Construction of Correlation Similarity Matrices for Gene Co-Expression Networks on Multicore Clusters. - Jorge González-Domínguez; María J. Martín (ICCS, 2017)

Evaluation of OpenMP SIMD Directives on Xeon Phi Coprocessors. - Christian Ponte-Fernández; Jorge González-Domínguez; María J. Martín (HPCS, 2017)

MarDRe: efficient MapReduce-based removal of duplicate DNA reads in the cloud. - Roberto R. Expósito; Jorge Veiga; Jorge González-Domínguez; Juan Touriño (Bioinform., 2017)

Speed and accuracy improvement of higher-order epistasis detection on CUDA-enabled GPUs. - Daniel Jünger; Christian Hundt 002; Jorge González-Domínguez; Bertil Schmidt (Clust. Comput., 2017)

Parallel definition of tear film maps on distributed-memory clusters for the support of dry eye diagnosis. - Jorge González-Domínguez; Beatriz Remeseiro; María J. Martín (Comput. Methods Programs Biomed., 2017)

parSRA: A framework for the parallel execution of short read aligners on compute clusters. - Jorge González-Domínguez; Christian Hundt 002; Bertil Schmidt (J. Comput. Sci., 2018)

MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters. - Jorge González-Domínguez; María J. Martín (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Analysis of the Construction of Similarity Matrices on Multi-core and Many-Core Platforms Using Different Similarity Metrics. - Uxía Casal; Jorge González-Domínguez; María J. Martín (ICCS (1), 2019)

Accelerating binary biclustering on platforms with CUDA-enabled GPUs. - Jorge González-Domínguez; Roberto R. Expósito (Inf. Sci., 2019)

Parallel feature selection for distributed-memory clusters. - Jorge González-Domínguez; Verónica Bolón-Canedo; Borja Freire; Juan Touriño (Inf. Sci., 2019)

SeQual: Big Data Tool to Perform Quality Control and Data Preprocessing of Large NGS Datasets. - Roberto R. Expósito; Roi Galego-Torreiro; Jorge González-Domínguez (IEEE Access, 2020)

Toxo: a library for calculating penetrance tables of high-order epistasis models. - Christian Ponte-Fernández; Jorge González-Domínguez; Antonio Carvajal-Rodríguez; María J. Martín (BMC Bioinform., 2020)

SMusket: Spark-based DNA error correction on distributed-memory systems. - Roberto R. Expósito; Jorge González-Domínguez; Juan Touriño (Future Gener. Comput. Syst., 2020)

CUDA-JMI: Acceleration of feature selection on heterogeneous systems. - Jorge González-Domínguez; Roberto R. Expósito; Verónica Bolón-Canedo (Future Gener. Comput. Syst., 2020)

Fast search of third-order epistatic interactions on CPU and GPU clusters. - Christian Ponte-Fernández; Jorge González-Domínguez; María J. Martín (Int. J. High Perform. Comput. Appl., 2020)

ScalaParBiBit: scaling the binary biclustering in distributed-memory systems. - Basilio B. Fraguela; Diego Andrade; Jorge González-Domínguez (Clust. Comput., 2021)

Generating penetrance tables of high-order epistasis models with PyToxo. - Borja González-Seoane; Christian Ponte-Fernández; Jorge González-Domínguez; María J. Martín (XoveTIC, 2022)

PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models. - Borja González-Seoane; Christian Ponte-Fernández; Jorge González-Domínguez; María J. Martín (BMC Bioinform., 2022)

A SIMD algorithm for the detection of epistatic interactions of any order. - Christian Ponte-Fernández; Jorge González-Domínguez; María J. Martín (Future Gener. Comput. Syst., 2022)

Parallel-FST: A feature selection library for multicore clusters. - Bieito Beceiro; Jorge González-Domínguez; Juan Touriño (J. Parallel Distributed Comput., 2022)

Evaluation of Existing Methods for High-Order Epistasis Detection. - Christian Ponte-Fernández; Jorge González-Domínguez; Antonio Carvajal-Rodríguez; María J. Martín (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

MPI-dot2dot: A parallel tool to find DNA tandem repeats on multicore clusters. - Jorge González-Domínguez; José M. Martín-Martínez; Roberto R. Expósito (J. Supercomput., 2022)

Fiuncho: a program for any-order epistasis detection in CPU clusters. - Christian Ponte-Fernández; Jorge González-Domínguez; María J. Martín (J. Supercomput., 2022)

Parallel construction of RNA databases for extensive lncRNA-RNA interaction prediction. - Iñaki Amatria-Barral; Jorge González-Domínguez; Juan Touriño (SAC, 2023)

pRIblast: A highly efficient parallel application for comprehensive lncRNA-RNA interaction prediction. - Iñaki Amatria-Barral; Jorge González-Domínguez; Juan Touriño (Future Gener. Comput. Syst., 2023)

ParRADMeth: Identification of Differentially Methylated Regions on Multicore Clusters. - Alejandro Fernández-Fraga; Jorge González-Domínguez; Juan Touriño (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

PATO: genome-wide prediction of lncRNA-DNA triple helices. - Iñaki Amatria-Barral; Jorge González-Domínguez; Juan Touriño (Bioinform., 2023)

Applying dynamic balancing to improve the performance of MPI parallel genomics applications. - Alejandro Fernández-Fraga; Jorge González-Domínguez; María J. Martín (SAC, 2024)

BigDEC: A multi-algorithm Big Data tool based on the k-mer spectrum method for scalable short-read error correction. - Roberto R. Expósito; Jorge González-Domínguez (Future Gener. Comput. Syst., 2024)

CUDA acceleration of MI-based feature selection methods. - Bieito Beceiro; Jorge González-Domínguez; Laura Morán-Fernández; Verónica Bolón-Canedo; Juan Touriño (J. Parallel Distributed Comput., 2024)

bioScience: A new python science library for high-performance computing bioinformatics analytics. - Aurelio López-Fernández; Francisco Antonio Gómez Vela; Jorge González-Domínguez; Parameshachari Bidare Divakarachari (SoftwareX, 2024)

PARamrfinder: detecting allele-specific DNA methylation on multicore clusters. - Alejandro Fernández-Fraga; Jorge González-Domínguez; María J. Martín (J. Supercomput., 2024)

BetaGPU: Harnessing GPU power for parallelized beta distribution functions. - Alejandro Fernández-Fraga; Jorge González-Domínguez; María J. Martín (SoftwareX, 2025)

Biclustering in bioinformatics using big data and High Performance Computing applications: challenges and perspectives, a review. - Aurelio López-Fernández; Francisco Antonio Gómez Vela; Domingo S. Rodríguez-Baena; Fernando M. Delgado-Chaves; Jorge González-Domínguez (J. Supercomput., 2025)