Parallelization of a Density Functional Program for Monte-Carlo Simulation of Large Molecules. - Jorge M. Pacheco; José Luís Martins (VECPAR, 2000)

Stern-Judging: A Simple, Successful Norm Which Promotes Cooperation under Indirect Reciprocity. - Jorge M. Pacheco; Francisco C. Santos; Fabio A. C. C. Chalub (PLoS Comput. Biol., 2006)

Cooperation Prevails When Individuals Adjust Their Social Ties. - Francisco C. Santos; Jorge M. Pacheco; Tom Lenaerts (PLoS Comput. Biol., 2006)

Evolution of Cooperation in a Population of Selfish Adaptive Agents. - Jorge M. Pacheco; Tom Lenaerts; Francisco C. Santos (ECAL, 2007)

A Multi-level Selection Model for the Emergence of Social Norms. - Francisco C. Santos; Fabio A. C. C. Chalub; Jorge M. Pacheco (ECAL, 2007)

The coevolution of loyalty and cooperation. - Sven Van Segbroeck; Francisco C. Santos; Ann Nowé; Jorge M. Pacheco; Tom Lenaerts (IEEE Congress on Evolutionary Computation, 2009)

Emergence of Cooperation in Adaptive Social Networks with Behavioral Diversity. - Sven Van Segbroeck; Francisco C. Santos; Tom Lenaerts; Jorge M. Pacheco (ECAL (1), 2009)

Population Structure Induces a Symmetry Breaking Favoring the Emergence of Cooperation. - Jorge M. Pacheco; Flávio L. Pinheiro; Francisco C. Santos (PLoS Comput. Biol., 2009)

Evolving the Asymmetry of the Prisoner's Dilemma Game in Adaptive Social Structures. - João Moreira; Jorge M. Pacheco; Francisco C. Santos (BIONETICS, 2010)

Evolutionary Dynamics of Cooperation under the Distributed Prisoner's Dilemma. - Flávio L. Pinheiro; Francisco C. Santos; Jorge M. Pacheco (BIONETICS, 2010)

Collective Evolutionary Dynamics and Spatial Reciprocity under the N-Person Snowdrift Game. - Marta D. Santos; Francisco C. Santos; Jorge M. Pacheco (BIONETICS, 2010)

Minimizing CO2 Emissions in a Computing World. - Carlos L. Reis; Jorge M. Pacheco (ICSEA, 2010)

Coevolution of Cooperation, Response to Adverse Social Ties and Network Structure. - Sven Van Segbroeck; Francisco C. Santos; Jorge M. Pacheco; Tom Lenaerts (Games, 2010)

Adaptive Contact Networks Change Effective Disease Infectiousness and Dynamics. - Sven Van Segbroeck; Francisco C. Santos; Jorge M. Pacheco (PLoS Comput. Biol., 2010)

Evolutionary dynamics of collective action. - Jorge M. Pacheco; Francisco C. Santos; Max O. Souza; Brian Skyrms (ECAL, 2011)

Co-evolution of pre-play signaling and cooperation. - Francisco C. Santos; Jorge M. Pacheco; Brian Skyrms (ECAL, 2011)

Modelling hematopoiesis in health and disease. - Diogo Peixoto; David Dingli; Jorge M. Pacheco (Math. Comput. Model., 2011)

Dynamics of Mutant Cells in Hierarchical Organized Tissues. - Benjamin Werner; David Dingli; Tom Lenaerts; Jorge M. Pacheco; Arne Traulsen (PLoS Comput. Biol., 2011)

Tracking the Evolution of Cooperation in Complex Networked Populations. - Flávio L. Pinheiro; Francisco C. Santos; Jorge M. Pacheco (EvoBIO, 2012)

Self-organized game dynamics in complex networks. - Flávio L. Pinheiro; Vítor V. Vasconcelos; Francisco C. Santos; Jorge M. Pacheco (ECAL, 2013)

Bootstrapping back the climate with self-organization. - Vítor V. Vasconcelos; Flávio L. Pinheiro; Francisco C. Santos; Jorge M. Pacheco (ECAL, 2013)

Urban Dynamics, Fractals and Generalized Entropy. - Sara Encarnação; Marcos E. Gaudiano; Francisco C. Santos; José António Tenedório; Jorge M. Pacheco (Entropy, 2013)

Reward from Punishment Does Not Emerge at All Costs. - Jeromos Vukov; Flávio L. Pinheiro; Francisco C. Santos; Jorge M. Pacheco (PLoS Comput. Biol., 2013)

Evolution of All-or-None Strategies in Repeated Public Goods Dilemmas. - Flávio L. Pinheiro; Vítor V. Vasconcelos; Francisco C. Santos; Jorge M. Pacheco (PLoS Comput. Biol., 2014)

The Universality of Peer-Influence in Social Networks. - Flávio L. Pinheiro; Marta D. Santos; Francisco C. Santos; Jorge M. Pacheco (ECAL, 2015)

Co-evolutionary Dynamics of Collective Action with Signaling for a Quorum. - Jorge M. Pacheco; Vítor V. Vasconcelos; Francisco C. Santos; Brian Skyrms (PLoS Comput. Biol., 2015)

Linking Individual to Collective Behavior in Complex Adaptive Networks. - Jorge M. Pacheco (ALIFE, 2016)

Cooperation and Reputation in Primitive Societies. - Jorge M. Pacheco; Francisco C. Santos; Fernando P. Santos (ALIFE, 2016)

Learning to be Fair in Multiplayer Ultimatum Games: (Extended Abstract). - Fernando P. Santos; Francisco C. Santos; Francisco S. Melo; Ana Paiva 001; Jorge M. Pacheco (AAMAS, 2016)

Dynamics of Fairness in Groups of Autonomous Learning Agents. - Fernando P. Santos; Francisco C. Santos; Francisco S. Melo; Ana Paiva 001; Jorge M. Pacheco (AAMAS Workshops (Selected Papers), 2016)

The Role of Execution Errors in Populations of Ultimatum Bargaining Agents. - Fernando P. Santos; Jorge M. Pacheco; Ana Paiva 001; Francisco C. Santos (COREDEMA@ECAI, 2016)

Execution Errors Enable the Evolution of Fairness in the Ultimatum Game. - Fernando P. Santos; Francisco C. Santos; Ana Paiva 001; Jorge M. Pacheco (ECAI, 2016)

An Evolutionary Game Theoretic Approach to Multi-Sector Coordination and Self-Organization. - Fernando P. Santos; Sara Encarnação; Francisco C. Santos; Juval Portugali; Jorge M. Pacheco (Entropy, 2016)

Social Norms of Cooperation in Small-Scale Societies. - Fernando P. Santos; Francisco C. Santos; Jorge M. Pacheco (PLoS Comput. Biol., 2016)

Social Norms of Cooperation With Costly Reputation Building. - Fernando P. Santos; Jorge M. Pacheco; Francisco C. Santos (AAAI, 2018)

Indirect Reciprocity and Costly Assessment in Multiagent Systems. - Fernando P. Santos; Jorge M. Pacheco; Francisco C. Santos (AAAI, 2018)

Multiplayer Ultimatum Games and Collective Fairness in Networked Communities. - Fernando P. Santos; Jorge M. Pacheco; Ana Paiva 001; Francisco C. Santos (ALIFE, 2018)

Human Cooperation and the Complexity of Moral Codes. - Fernando P. Santos; Jorge M. Pacheco; Francisco C. Santos (ALIFE, 2018)

Evolutionary dynamics of paroxysmal nocturnal hemoglobinuria. - Nathaniel Mon Père; Tom Lenaerts; Jorge M. Pacheco; David Dingli (PLoS Comput. Biol., 2018)

Evolution of Collective Fairness in Hybrid Populations of Humans and Agents. - Fernando P. Santos; Jorge M. Pacheco; Ana Paiva 001; Francisco C. Santos (AAAI, 2019)

Social Network Interventions to Prevent Reciprocity-driven Polarization. - Fernando P. Santos; Francisco C. Santos; Jorge M. Pacheco; Simon A. Levin (AAMAS, 2021)