Geometric control of particle manipulation in a two-dimensional fluid. - Yizhar Or; Joris Vankerschaver; Scott David Kelly; Richard M. Murray; Jerrold E. Marsden (CDC, 2009)

Stokes-Dirac structures through reduction of infinite-dimensional Dirac structures. - Joris Vankerschaver; Hiroaki Yoshimura; Melvin Leok; Jerrold E. Marsden (CDC, 2010)

Hamiltonian mechanics and nonlinear dynamics of a body subject to time-varying gyroscopic and potential forces. - Scott David Kelly; Joris Vankerschaver (CDC, 2012)

A Novel Formulation of Point Vortex Dynamics on the Sphere: Geometrical and Numerical Aspects. - Joris Vankerschaver; Melvin Leok (J. Nonlinear Sci., 2014)

Utilizing Mutations to Evaluate Interpretability of Neural Networks on Genomic Data. - Utku Ozbulak; Solha Kang; Jasper Zuallaert; Stephen Depuydt; Joris Vankerschaver (CoRR, 2022)

Feedback Integrators for Mechanical Systems with Holonomic Constraints. - Dong Eui Chang; Matthew Perlmutter; Joris Vankerschaver (Sensors, 2022)

VPsearch: fast exact sequence similarity search for genomic sequences. - Joris Vankerschaver; Steven J. Kern; Robert Kern (J. Open Source Softw., 2022)

Towards Abdominal 3-D Scene Rendering from Laparoscopy Surgical Videos Using NeRFs. - Khoa Tuan Nguyen; Francesca Tozzi; Nikdokht Rashidian; Wouter Willaert; Joris Vankerschaver; Wesley De Neve (MLMI@MICCAI (1), 2023)

BRCA Gene Mutations in dbSNP: A Visual Exploration of Genetic Variants. - Woowon Jang; Shiwoo Koak; Jiwon Im; Utku Ozbulak; Joris Vankerschaver (CoRR, 2023)

Know Your Self-supervised Learning: A Survey on Image-based Generative and Discriminative Training. - Utku Ozbulak; Hyun Jung Lee; Beril Boga; Esla Timothy Anzaku; Ho-min Park; Arnout Van Messem; Wesley De Neve; Joris Vankerschaver (Trans. Mach. Learn. Res., 2023)

CRISPR-Cas-Docker: web-based in silico docking and machine learning-based classification of crRNAs with Cas proteins. - Ho-min Park; Jongbum Won; Yunseol Park; Esla Timothy Anzaku; Joris Vankerschaver; Arnout Van Messem; Wesley De Neve; Hyunjin Shim (BMC Bioinform., 2023)

Grasshopper Optimization Algorithm (GOA): A Novel Algorithm or A Variant of PSO? - Negin Harandi; Arnout Van Messem; Wesley De Neve; Joris Vankerschaver (ANTS, 2024)

Self-supervised Benchmark Lottery on ImageNet: Do Marginal Improvements Translate to Improvements on Similar Datasets? - Utku Ozbulak; Esla Timothy Anzaku; Solha Kang; Wesley De Neve; Joris Vankerschaver (IJCNN, 2024)

Identifying Critical Tokens for Accurate Predictions in Transformer-Based Medical Imaging Models. - Solha Kang; Joris Vankerschaver; Utku Ozbulak (MLMI@MICCAI (2), 2024)

Assessing the reliability of point mutation as data augmentation for deep learning with genomic data. - Hyun Jung Lee; Utku Ozbulak; Homin Park; Stephen Depuydt; Wesley De Neve; Joris Vankerschaver (BMC Bioinform., 2024)

Towards Improved Cervical Cancer Screening: Vision Transformer-Based Classification and Interpretability. - Khoa Tuan Nguyen; Homin Park; Gaeun Oh; Joris Vankerschaver; Wesley De Neve (ISBI, 2025)

Less is More? Revisiting the Importance of Frame Rate in Real-Time Zero-Shot Surgical Video Segmentation. - Utku Ozbulak; Seyed Amir Mousavi; Francesca Tozzi; Nikdokht Rashidian; Wouter Willaert; Wesley De Neve; Joris Vankerschaver (CoRR, 2025)

One Patient's Annotation is Another One's Initialization: Towards Zero-Shot Surgical Video Segmentation with Cross-Patient Initialization. - Seyed Amir Mousavi; Utku Ozbulak; Francesca Tozzi; Nikdokht Rashidian; Wouter Willaert; Joris Vankerschaver; Wesley De Neve (CoRR, 2025)

Boosting 3D Liver Shape Datasets with Diffusion Models and Implicit Neural Representations. - Khoa Tuan Nguyen; Francesca Tozzi; Wouter Willaert; Joris Vankerschaver; Nikdokht Rashidian; Wesley De Neve (CoRR, 2025)

Towards Affordable Tumor Segmentation and Visualization for 3D Breast MRI Using SAM2. - Solha Kang; Eugene Kim; Joris Vankerschaver; Utku Ozbulak (CoRR, 2025)