Application Domains: Genome Projects of Model Organisms. - Alfred Pühler; Doris Jording; Jörn Kalinowski; Detlev Buttgereit; Renate Renkawitz-Pohl; Lothar Altschmied; Antoine Danchin; Horst Feldmann; Hans-Peter Klenk; Manfred Krüger (Essentials of Genomics and Bioinformatics, 2002)

PathFinder: reconstruction and dynamic visualization of metabolic pathways. - Alexander Goesmann; Martin Haubrock; Folker Meyer; Jörn Kalinowski; Robert Giegerich (Bioinform., 2002)

CoryneCenter - An online resource for the integrated analysis of corynebacterial genome and transcriptome data. - Heiko Neuweger; Jan Baumbach; Stefan P. Albaum; Thomas Bekel; Michael Dondrup; Andrea T. Hüser; Jörn Kalinowski; Sebastian Oehm; Alfred Pühler; Sven Rahmann; Jochen Weile; Alexander Goesmann (BMC Syst. Biol., 2007)

Qupe - a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. - Stefan P. Albaum; Heiko Neuweger; Benjamin Fränzel; Sita Lange; Dominik Mertens; Christian Trötschel; Dirk Wolters; Jörn Kalinowski; Tim W. Nattkemper; Alexander Goesmann (Bioinform., 2009)

Visualizing post genomics data-sets on customized pathway maps by ProMeTra - aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. - Heiko Neuweger; Marcus Persicke; Stefan P. Albaum; Thomas Bekel; Michael Dondrup; Andrea T. Hüser; Jörn Winnebald; Jessica Schneider; Jörn Kalinowski; Alexander Goesmann (BMC Syst. Biol., 2009)

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. - Jochen Blom; Tobias Jakobi; Daniel Doppmeier; Sebastian Jaenicke; Jörn Kalinowski; Jens Stoye; Alexander Goesmann (Bioinform., 2011)

ReadXplorer - visualization and analysis of mapped sequences. - Rolf Hilker; Kai Bernd Stadermann; Daniel Doppmeier; Jörn Kalinowski; Jens Stoye; Jasmin Straube; Jörn Winnebald; Alexander Goesmann (Bioinform., 2014)

Promoter recognition specificity of Corynebacterium glutamicum stress response sigma factors σD and σH deciphered using computer modeling and point mutagenesis. - Jan Blumenstein; Hana Dostálová; Lenka Rucká; Vaclav Stepánek; Tobias Busche; Jörn Kalinowski; Miroslav Pátek; Ivan Barvík (J. Comput. Aided Mol. Des., 2025)