Middle-out Modeling of Multiscale Morphodynamics. - Walter de Back; Jörn Starruß (ALIFE, 2010)

Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology. - Jörn Starruß; Walter de Back; Lutz Brusch; Andreas Deutsch (Bioinform., 2014)

A Workflow for the Integral Performance Analysis of Cloud Applications Using Monitoring and Tracing Techniques. - Yedhu Sastri; Kim Feldhoff; Jörn Starruß; René Jäkel; Ralph Müller-Pfefferkorn (ICCBDC, 2017)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

Collective cell migration due to guidance-by-followers is robust to multiple stimuli. - Robert Müller; Arthur Boutillon; Diego Jahn; Jörn Starruß; Nicolas B. David; Lutz Brusch (Frontiers Appl. Math. Stat., 2023)

Influence of cell type specific infectivity and tissue composition on SARS-CoV-2 infection dynamics within human airway epithelium. - Benjamin Raach; Nils Bundgaard; Marika J. Haase; Jörn Starruß; Rocio Sotillo; Megan L. Stanifer; Frederik Graw (PLoS Comput. Biol., 2023)

FitMultiCell: simulating and parameterizing computational models of multi-scale and multi-cellular processes. - Emad Alamoudi; Yannik Schälte; Robert Müller; Jörn Starruß; Nils Bundgaard; Frederik Graw; Lutz Brusch; Jan Hasenauer (Bioinform., 2023)

Deep Neural Cellular Potts Models. - Koen Minartz; Tim D'Hondt; Leon Hillmann; Jörn Starruß; Lutz Brusch; Vlado Menkovski (CoRR, 2025)