Visualization for genomics: the Microbial Genome Viewer. - Robert Kerkhoven; Frank H. J. van Enckevort; Jos Boekhorst; Douwe Molenaar; Roland J. Siezen (Bioinform., 2004)

Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties. - Jos Boekhorst; Berend Snel (BMC Bioinform., 2007)

LocateP: Genome-scale subcellular-location predictor for bacterial proteins. - Miaomiao Zhou; Jos Boekhorst; Christof Francke; Roland J. Siezen (BMC Bioinform., 2008)

Enrichment of homologs in insignificant BLAST hits by co-complex network alignment. - Like Fokkens; Sandra M. C. Botelho; Jos Boekhorst; Berend Snel (BMC Bioinform., 2010)

Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle? - Wouter G. Touw; Jumamurat R. Bayjanov; Lex Overmars; Lennart Backus; Jos Boekhorst; Michiel Wels; Sacha A. F. T. van Hijum (Briefings Bioinform., 2013)

Microbial bioinformatics for food safety and production. - Wynand Alkema; Jos Boekhorst; Michiel Wels; Sacha A. F. T. van Hijum (Briefings Bioinform., 2016)