Confidence-based Somatic Mutation Evaluation and Prioritization. - Martin Löwer; Bernhard Y. Renard; Jos de Graaf; Meike Wagner; Claudia Paret; Christoph Kneip; Özlem Türeci; Mustafa Diken; Cedrik M. Britten; Sebastian Kreiter; Michael Koslowski; John C. Castle; et al. (PLoS Comput. Biol., 2012)

Galaxy LIMS for next-generation sequencing. - Jelle Scholtalbers; Jasmin Rößler; Patrick Sorn; Jos de Graaf; Valesca Boisguérin; John C. Castle; Ugur Sahin (Bioinform., 2013)

Integrative analysis of structural variations using short-reads and linked-reads yields highly specific and sensitive predictions. - Riccha Sethi; Julia Becker; Jos de Graaf; Martin Löwer; Martin Suchan; Ugur Sahin; David Weber (PLoS Comput. Biol., 2020)