Segmentation of Overlapping Macrophages Using Anglegram Analysis. - José Alonso Solís-Lemus; Brian Stramer; Greg G. Slabaugh; Constantino Carlos Reyes-Aldasoro (MIUA, 2017)

Shape analysis and tracking of migrating macrophages. - José Alonso Solís-Lemus; Brian Stramer; Greg G. Slabaugh; Constantino Carlos Reyes-Aldasoro (ISBI, 2018)

Analysis of the Interactions of Migrating Macrophages. - José Alonso Solís-Lemus; Brian Stramer; Greg G. Slabaugh; Constantino Carlos Reyes-Aldasoro (MIUA, 2018)

Segmentation and Shape Analysis of Macrophages Using Anglegram Analysis. - José Alonso Solís-Lemus; Brian Stramer; Gregory G. Slabaugh; Constantino Carlos Reyes-Aldasoro (J. Imaging, 2018)

Comparison of Interactions Between Control and Mutant Macrophages. - José Alonso Solís-Lemus; Besaid J. Sánchez-Sánchez; Stefania Marcotti; Mubarik Burki; Brian Stramer; Constantino Carlos Reyes-Aldasoro (MIUA, 2019)

Macrosight: A Novel Framework to Analyze the Shape and Movement of Interacting Macrophages Using Matlab®. - José Alonso Solís-Lemus; Brian Stramer; Greg G. Slabaugh; Constantino Carlos Reyes-Aldasoro (J. Imaging, 2019)

Direct Transcription for Dynamic Optimization: A Tutorial with a Case Study on Dual-Patient Ventilation During the COVID-19 Pandemic. - Eric C. Kerrigan; Yuanbo Nie; Omar J. Faqir; Caroline H. Kennedy; Steven A. Niederer; José Alonso Solís-Lemus; Peter Vincent; Steven E. Williams (CDC, 2020)

Constructing Virtual Patient Cohorts for Simulating Atrial Fibrillation Ablation. - Caroline H. Roney; Marianne Beach; Arihant Mehta; Iain Sim; Cesare Corrado; Rokas Bendikas; José Alonso Solís-Lemus; Orod Razeghi; John Whitaker; Louisa O'Neill; Gernot Plank; Edward J. Vigmond; et al. (CinC, 2020)

Software Framework to Quantify Pulmonary Vein Isolation Atrium Scar Tissue. - José Alonso Solís-Lemus; Orod Razeghi; Caroline H. Roney; Iain Sim; Rahul K. Mukherjee; Steven Williams 001; Mark D. O'Neill; Steven A. Niederer (CinC, 2020)

Comparative Study of Contact Repulsion in Control and Mutant Macrophages Using a Novel Interaction Detection. - José Alonso Solís-Lemus; Besaiz J. Sánchez-Sánchez; Stefania Marcotti; Mubarik Burki; Brian Stramer; Constantino Carlos Reyes-Aldasoro (J. Imaging, 2020)

CemrgApp: An interactive medical imaging application with image processing, computer vision, and machine learning toolkits for cardiovascular research. - Orod Razeghi; José Alonso Solís-Lemus; Angela W. C. Lee; Rashed Karim; Cesare Corrado; Caroline H. Roney; Adelaide de Vecchi; Steven A. Niederer (SoftwareX, 2020)

Using the Universal Atrial Coordinate System for MRI and Electroanatomic Data Registration in Patient-Specific Left Atrial Model Construction and Simulation. - Marianne Beach; Iain Sim; Arihant Mehta; Irum Kotadia; Daniel O'Hare; John Whitaker; José Alonso Solís-Lemus; Orod Razeghi; Amedeo Chiribiri; Mark D. O'Neill; Steven Williams 001; Steven A. Niederer; et al. (FIMH, 2021)

Non-invasive simulated electrical and measured mechanical indices predict response to cardiac resynchronization therapy. - Angela W. C. Lee; Orod Razeghi; José Alonso Solís-Lemus; Marina Strocchi; Baldeep Sidhu; Justin Gould; Jonathan M. Behar; Mark K. Elliott; Vishal Mehta; Gernot Plank; Christopher A. Rinaldi; Steven A. Niederer (Comput. Biol. Medicine, 2021)

The Effect of Heart Rate and Atrial Contraction on Left Ventricular Function. - Rosie K. Barrows; Marina Strocchi; Christoph M. Augustin; Matthias A. F. Gsell; Caroline H. Roney; José Alonso Solís-Lemus; Hao Xu; Karli K. Gillette; Ronak Rajani; John Whitaker; Edward J. Vigmond; Martin J. Bishop 001; et al. (CinC, 2022)

Biatrial Modelling for In Silico Prediction of Atrial Fibrillation Inducibility. - Semhar B. Misghina; José Alonso Solís-Lemus; Edward J. Vigmond; Steven A. Niederer; Caroline H. Roney (CinC, 2023)

Model Reproducibility Study on Left Atrial Fibres. - José Alonso Solís-Lemus; Tiffany M. G. Baptiste; Rosie K. Barrows; Charles Sillett; Ali Gharaviri; Giulia Raffaele; Orod Razeghi; Marina Strocchi; Iain Sim; Irum Kotadia; Neil Bodagh; Daniel O'Hare; et al. (CoRR, 2023)

Quantifying the impact of shape uncertainty on predicted arrhythmias. - Cesare Corrado; Caroline H. Roney; Orod Razeghi; José Alonso Solís-Lemus; Sam Coveney; Iain Sim; Steven E. Williams; Mark D. O'Neill; Richard D. Wilkinson; Richard H. Clayton; Steven A. Niederer (Comput. Biol. Medicine, 2023)

Evaluation of an open-source pipeline to create patient-specific left atrial models: A reproducibility study. - José Alonso Solís-Lemus; Tiffany M. G. Baptiste; Rosie K. Barrows; Charles Sillett; Ali Gharaviri; Giulia Raffaele; Orod Razeghi; Marina Strocchi; Iain Sim; Irum Kotadia; Neil Bodagh; Daniel O'Hare; et al. (Comput. Biol. Medicine, 2023)

Assessment of Left Atrium Motion Deformation Through Full Cardiac Cycle. - Abdul Qayyum; Moona Mazher; Angela W. C. Lee; José Alonso Solís-Lemus; Imran Razzak; Steven A. Niederer (AI (2), 2024)

Multi-scale Whole-Heart Electromechanics Modeling to Link Cellular, Tissue and Systemic Properties to Cardiac Biomarkers in the Diabetic Male and Female Heart. - Marina Strocchi; Rosie K. Barrows; Cristóbal Rodero; José Alonso Solís-Lemus; Shuang Qian; Ludovica Cicci; Abdul Qayyum; Devran Ugurlu; Christoph M. Augustin; Matthias A. F. Gsell; Edward J. Vigmond; Gernot Plank; et al. (FIMH (1), 2025)

Foundation Model for Whole-Heart Segmentation: Leveraging Student-Teacher Learning in Multi-Modal Medical Imaging. - Abdul Qayyum; Moona Mazher; Devran Ugurlu; José Alonso Solís-Lemus; Cristóbal Rodero; Steven A. Niederer (CoRR, 2025)