Populating Ontologies in the eTourism Domain. - Juana María Ruiz-Martínez; José Antonio Miñarro-Giménez; Laura Guillén-Cárceles; Dagoberto Castellanos Nieves; Rafael Valencia-García; Francisco García-Sánchez 001; Jesualdo Tomás Fernández-Breis; Rodrigo Martínez-Béjar (Web Intelligence/IAT Workshops, 2008)

An Integrated Ontological Knowledge Base About Orthologous Genes and Proteins. - José Antonio Miñarro-Giménez; Marisa Madrid; Jesualdo Tomás Fernández-Breis (SWAT4LS, 2008)

Semantic integration and exploitation of orthology information and genetic disorders. - José Antonio Miñarro-Giménez; Marisa Madrid; Jesualdo Tomás Fernández-Breis (SWAT4LS, 2009)

OGO: an ontological approach for integrating knowledge about orthology. - José Antonio Miñarro-Giménez; Marisa Madrid; Jesualdo Tomás Fernández-Breis (BMC Bioinform., 2009)

A Semantic Query Interface for the OGO Platform. - José Antonio Miñarro-Giménez; Mikel Egaña Aranguren; Francisco García-Sánchez 001; Jesualdo Tomás Fernández-Breis (ITBAM, 2010)

Flexible Semantic Querying of Clinical Archetypes. - Catalina Martínez-Costa; José Antonio Miñarro-Giménez; Marcos Menárguez Tortosa; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis (KES (1), 2010)

Using ontologies for supporting genomic sequence annotation projects. - María Del Carmen Legaz-García; José Antonio Miñarro-Giménez; Marisa Madrid; Santiago Torres Martínez; Jesualdo Tomás Fernández-Breis (BCB, 2011)

Ontology-Driven Method for Integrating Biomedical Repositories. - José Antonio Miñarro-Giménez; Jesualdo Tomás Fernández-Breis (CAEPIA, 2011)

Exploitation of Translational Bioinformatics for Decision-Making on Cancer Treatments. - José Antonio Miñarro-Giménez; Teddy G. Miranda-Mena; Rodrigo Martínez-Béjar; Jesualdo Tomás Fernández-Breis (ITBAM, 2011)

Semantic integration of information about orthologs and diseases: The OGO system. - José Antonio Miñarro-Giménez; Mikel Egaña Aranguren; Rodrigo Martínez-Béjar; Jesualdo Tomás Fernández-Breis; Marisa Madrid (J. Biomed. Informatics, 2011)

NCBO-Galaxy: bridging the BioPortal web services and the Galaxy platform. - José Antonio Miñarro-Giménez; Mikel Egaña Aranguren; Jesualdo Tomás Fernández-Breis; Erick Antezana (ICBO, 2012)

Using the ResearchEHR platform to facilitate the practical application of the EHR standards. - José Alberto Maldonado; Catalina Martínez-Costa; David Moner; Marcos Menárguez Tortosa; Diego Boscá; José Antonio Miñarro-Giménez; Jesualdo Tomás Fernández-Breis; Montserrat Robles (J. Biomed. Informatics, 2012)

A Semantic based Platform for Research and Development Projects Management in the ICT Domain. - Carlos García Moreno; Yolanda Hernández-González; Miguel Ángel Rodríguez-García; José Antonio Miñarro-Giménez; Rafael Valencia-García; Ángela Almela (J. Univers. Comput. Sci., 2013)

Towards a Global IT System for Personalized Medicine: the Medicine Safety Code Initiative. - Matthias Samwald; José Antonio Miñarro-Giménez; Kathrin Blagec; Klaus-Peter Adlassnig (eHealth, 2014)

Visualising topic networks in infection control using word vector analysis. - Jeroen S. de Bruin; José Antonio Miñarro-Giménez; Matthias Samwald; Oscar Marín-Alonso (MIE, 2014)

Ontology patterns-based transformation of clinical information. - María Del Carmen Legaz-García; Catalina Martínez-Costa; José Antonio Miñarro-Giménez; Jesualdo Tomás Fernández-Breis; Stefan Schulz 001; Marcos Menárguez Tortosa (MIE, 2014)

Exploring the Application of Deep Learning Techniques on Medical Text Corpora. - José Antonio Miñarro-Giménez; Oscar Marín-Alonso; Matthias Samwald (MIE, 2014)

Using concept co-occurrences for a biomedical facts acquisition. - José Antonio Miñarro-Giménez; Catalina Martínez-Costa; Stefan Schulz 001 (MIE, 2014)

An Update on Genomic CDS, a Complex Ontology for Pharmacogenomics and Clinical Decision Support. - José Antonio Miñarro-Giménez; Matthias Samwald (ORE, 2014)

Translational research combining orthologous genes and human diseases with the OGOLOD dataset. - José Antonio Miñarro-Giménez; Mikel Egaña Aranguren; Boris Villazón-Terrazas; Jesualdo Tomás Fernández-Breis (Semantic Web, 2014)

Knowledge Extraction from MEDLINE by Combining Clustering with Natural Language Processing. - José Antonio Miñarro-Giménez; Markus Kreuzthaler; Stefan Schulz 001 (AMIA, 2015)

Acquiring Plausible Predications from MEDLINE by Clustering MeSH Annotations. - José Antonio Miñarro-Giménez; Markus Kreuzthaler; Johannes Bernhardt-Melischnig; Catalina Martínez-Costa; Stefan Schulz 001 (MedInfo, 2015)

Lessons learned in the generation of biomedical research datasets using Semantic Open Data technologies. - María Del Carmen Legaz-García; José Antonio Miñarro-Giménez; Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis (MIE, 2015)

Acquisition of Character Translation Rules for Supporting SNOMED CT Localizations. - José Antonio Miñarro-Giménez; Johannes Hellrich; Stefan Schulz 001 (MIE, 2015)

Applying deep learning techniques on medical corpora from the World Wide Web: a prototypical system and evaluation. - José Antonio Miñarro-Giménez; Oscar Marín-Alonso; Matthias Samwald (CoRR, 2015)

Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies. - Matthias Samwald; José Antonio Miñarro-Giménez; Richard D. Boyce; Robert R. Freimuth; Klaus-Peter Adlassnig; Michel Dumontier (BMC Medical Informatics Decis. Mak., 2015)

MapReduce in the Cloud: A Use Case Study for Efficient Co-Occurrence Processing of MEDLINE Annotations with MeSH. - Markus Kreuzthaler; José Antonio Miñarro-Giménez; Stefan Schulz 001 (MIE, 2016)

Publishing Biomedical Predication Repository About MeSH Co-Occurrences in MEDLINE. - José Antonio Miñarro-Giménez; Manuel Quesada-Martínez; Jesualdo Tomás Fernández-Breis; Stefan Schulz 001 (MIE, 2016)

Qualitative assessment of annotations using SNOMED CT. - José Antonio Miñarro-Giménez; Catalina Martínez-Costa; Stefan Schulz 001 (ODLS, 2016)

Generation of open biomedical datasets through ontology-driven transformation and integration processes. - María Del Carmen Legaz-García; José Antonio Miñarro-Giménez; Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis (J. Biomed. Semant., 2016)

Lexical Ambiguity in SNOMED CT. - Stefan Schulz 001; Catalina Martínez-Costa; José Antonio Miñarro-Giménez (JOWO, 2017)

Analysis of MeSH Indexing Patterns and Frequency of Predicates. - José Antonio Miñarro-Giménez; Stefan Schulz 001 (MIE, 2018)

Addressing the Negation Gap in SNOMED CT by Reified Negated Concepts. - Catalina Martínez-Costa; José Antonio Miñarro-Giménez; Robert R. Hausam; Stefan Schulz 001 (JOWO, 2019)

Quantitative analysis of manual annotation of clinical text samples. - José Antonio Miñarro-Giménez; Ronald Cornet; Marie-Christine Jaulent; Heike Dewenter; Sylvia Thun; Kirstine Rosenbeck Gøeg; Daniel Karlsson; Stefan Schulz 001 (Int. J. Medical Informatics, 2019)

Performance assessment of ontology matching systems for FAIR data. - Philip van Damme; Jesualdo Tomás Fernández-Breis; Nirupama Benis; José Antonio Miñarro-Giménez; Nicolette F. de Keizer; Ronald Cornet (J. Biomed. Semant., 2022)

Ontology Model for Supporting Process Mining on Healthcare-Related Data. - José Antonio Miñarro-Giménez; Carlos Fernández-Llatas; Begoña Martínez-Salvador; Catalina Martínez-Costa; Mar Marcos; Jesualdo Tomás Fernández-Breis (AIME, 2023)

AIInFunds. Intelligent Services for Monitoring Tendencies of Alternative Investment Funds. - José Antonio García-Díaz; José Antonio Miñarro-Giménez; Ángela Almela; Gema Alcaraz-Mármol; María José Marín-Pérez; Francisco García-Sánchez 001; Rafael Valencia-García (SEPLN (Projects and Demonstrations), 2023)

FD. A Platform for Monitoring Financial and Economic Information towards Alternative Investment Funds. - José Antonio García-Díaz; José Antonio Miñarro-Giménez; Ángela Almela; Gema Alcaraz-Mármol; María José Marín-Pérez; Francisco García-Sánchez 001; Rafael Valencia-García (SEPLN (Projects and Demonstrations), 2023)

Supporting SNOMED CT postcoordination with knowledge graph embeddings. - Javier Castell-Díaz; José Antonio Miñarro-Giménez; Catalina Martínez-Costa (J. Biomed. Informatics, 2023)

Language Technology-based Political Microtargeting Services. - José Antonio García-Díaz; María José Marín-Pérez; Gema Alcaraz-Mármol; Ángela Almela; José Antonio Miñarro-Giménez; Francisco García-Sánchez 001 (CITI, 2024)