Probabilistic retrieval and visualization of biologically relevant microarray experiments. - José Caldas; Nils Gehlenborg; Ali Faisal; Alvis Brazma; Samuel Kaski (BMC Bioinform., 2009)

Hierarchical Generative Biclustering for MicroRNA Expression Analysis. - José Caldas; Samuel Kaski (J. Comput. Biol., 2011)

Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma. - José Caldas; Nils Gehlenborg; Eeva Kettunen; Ali Faisal; Mikko Rönty; Andrew G. Nicholson; Sakari Knuutila; Alvis Brazma; Samuel Kaski (Bioinform., 2012)

Graphical models for biclustering and information retrieval in gene expression data. - José Caldas (2012)

Prediction of Forest Aboveground Biomass: An Exercise on Avoiding Overfitting. - Sara Silva; Vijay Ingalalli; Susana Vinga; João Manuel de Brito Carreiras; Joana B. Melo; Mauro Castelli; Leonardo Vanneschi; Ivo Gonçalves; José Caldas (EvoApplications, 2013)

A Latent Feature Model Approach to Biclustering. - José Caldas; Samuel Kaski (Int. J. Knowl. Discov. Bioinform., 2016)