De novo Transcriptome Assembly of Solea senegalensis v5.0 Using TransFlow. - José Córdoba-Caballero; Pedro Seoane-Zonjic; Manuel Manchado; M. Gonzalo Claros (IWBBIO (1), 2019)

Deepening the knowledge of rare diseases dependent on angiogenesis through semantic similarity clustering and network analysis. - Raquel Pagano-Márquez; José Córdoba-Caballero; Beatriz Martínez-Poveda; Ana R. Quesada; Elena Rojano; Pedro Seoane; Juan A. G. Ranea; Miguel Ángel Medina (Briefings Bioinform., 2022)

Assigning protein function from domain-function associations using DomFun. - Elena Rojano; Fernando Moreno Jabato; James Richard Perkins; José Córdoba-Caballero; Federico García-Criado; Ian Sillitoe; Christine A. Orengo; Juan A. G. Ranea; Pedro Seoane-Zonjic (BMC Bioinform., 2022)

Integrating differential expression, co-expression and gene network analysis for the identification of common genes associated with tumor angiogenesis deregulation. - Beatriz Monterde; Elena Rojano; José Córdoba-Caballero; Pedro Seoane; James Richard Perkins; Miguel Ángel Medina; Juan A. G. Ranea (J. Biomed. Informatics, 2023)

Exploring miRNA-target gene pair detection in disease with coRmiT. - José Córdoba-Caballero; James Richard Perkins; Federico García-Criado; Diana Gallego; Alicia Navarro-Sánchez; Mireia Moreno-Estellés; Concepción Garcés; Fernando Bonet; Carlos Romá-Mateo; Rocio Toro; Belén Perez; Pascual Sanz; et al. (Briefings Bioinform., 2024)