ChemMaps: Towards an approach for visualizing the chemical space based on adaptive satellite compounds. - J. Jesús Naveja; José L. Medina-Franco (F1000Research, 2017)

Analysis of a large food chemical database: chemical space, diversity, and complexity. - J. Jesús Naveja; Mariel P. Rico-Hidalgo; José L. Medina-Franco (F1000Research, 2018)

HitPickV2: a web server to predict targets of chemical compounds. - Sabri Hamad; Gianluca Adornetto; J. Jesús Naveja; Aakash Chavan Ravindranath; Johannes Raffler; Mónica Campillos (Bioinform., 2019)

A general approach for retrosynthetic molecular core analysis. - J. Jesús Naveja; B. Angélica Pilón-Jiménez; Jürgen Bajorath; José L. Medina-Franco (J. Cheminformatics, 2019)

Exploration of Target Synergy in Cancer Treatment by Cell-Based Screening Assay and Network Propagation Analysis. - J. Jesús Naveja; Dagmar Stumpfe; José L. Medina-Franco; Jürgen Bajorath (J. Chem. Inf. Model., 2019)

Generation of a high confidence set of domain-domain interface types to guide protein complex structure predictions by AlphaFold. - Johanna Lena Geist; Chop Yan Lee; Joelle Morgan Strom; José de Jesús Naveja; Katja Luck (Bioinform., 2024)