Contributos do Projecto ESSI na Melhoria do Desenvolvimento de Software. - Maria Clara Silveira; José Fonseca 002 (QUATIC, 2001)

Monitoring Database Application Behavior for Intrusion Detection. - José Fonseca 002; Marco Vieira; Henrique Madeira (PRDC, 2006)

Integrated Intrusion Detection in Databases. - José Fonseca 002; Marco Vieira; Henrique Madeira (LADC, 2007)

Testing and Comparing Web Vulnerability Scanning Tools for SQL Injection and XSS Attacks. - José Fonseca 002; Marco Vieira; Henrique Madeira (PRDC, 2007)

Detecting Malicious SQL. - José Fonseca 002; Marco Vieira; Henrique Madeira (TrustBus, 2007)

Mapping software faults with web security vulnerabilities. - José Fonseca 002; Marco Vieira (DSN, 2008)

Training Security Assurance Teams Using Vulnerability Injection. - José Fonseca 002; Marco Vieira; Henrique Madeira (PRDC, 2008)

Online detection of malicious data access using DBMS auditing. - José Fonseca 002; Marco Vieira; Henrique Madeira (SAC, 2008)

Vulnerability & attack injection for web applications. - José Fonseca 002; Marco Vieira; Henrique Madeira (DSN, 2009)

Looking at Web Security Vulnerabilities from the Programming Language Perspective: A Field Study. - Nuno Seixas; José Fonseca 002; Marco Vieira; Henrique Madeira (ISSRE, 2009)

Comparing SQL Injection Detection Tools Using Attack Injection: An Experimental Study. - Ivano Alessandro Elia; José Fonseca 002; Marco Vieira (ISSRE, 2010)

The Web Attacker Perspective - A Field Study. - José Fonseca 002; Marco Vieira; Henrique Madeira (ISSRE, 2010)

Field Studies on Resilience: Measurements and Repositories. - João Durães; José Fonseca 002; Henrique Madeira; Marco Vieira (Resilience Assessment and Evaluation of Computing Systems, 2012)

Analysis of Field Data on Web Security Vulnerabilities. - José Fonseca 002; Nuno Seixas; Marco Vieira; Henrique Madeira (IEEE Trans. Dependable Secur. Comput., 2014)

Evaluation of Web Security Mechanisms Using Vulnerability & Attack Injection. - José Fonseca 002; Marco Vieira; Henrique Madeira (IEEE Trans. Dependable Secur. Comput., 2014)

phpSAFE: A Security Analysis Tool for OOP Web Application Plugins. - Paulo Jorge Costa Nunes; José Fonseca 002; Marco Vieira (DSN, 2015)

On Combining Diverse Static Analysis Tools for Web Security: An Empirical Study. - Paulo Jorge Costa Nunes; Iberia Medeiros; José Fonseca 002; Nuno Ferreira Neves; Miguel Correia 001; Marco Vieira (EDCC, 2017)

Finding SQL Injection and Cross Site Scripting Vulnerabilities with Diverse Static Analysis Tools. - Areej Algaith; Paulo Jorge Costa Nunes; José Fonseca 002; Ilir Gashi; Marco Vieira (EDCC, 2018)

Benchmarking Static Analysis Tools for Web Security. - Paulo Jorge Costa Nunes; Iberia Medeiros; José Fonseca 002; Nuno Neves 001; Miguel Correia 001; Marco Vieira (IEEE Trans. Reliab., 2018)

An empirical study on combining diverse static analysis tools for web security vulnerabilities based on development scenarios. - Paulo Jorge Costa Nunes; Ibéria Medeiros; José Fonseca 002; Nuno Neves 001; Miguel Correia 001; Marco Vieira (Computing, 2019)

Using AI to Inject Vulnerabilities in Python Code. - C. G. Frédéric Bogaerts; Naghmeh Ivaki; José Fonseca 002 (DSN-W, 2023)

A Taxonomy for Python Vulnerabilities. - C. G. Frédéric Bogaerts; Naghmeh Ivaki; José Fonseca 002 (IEEE Open J. Comput. Soc., 2024)

Blending Static and Dynamic Analysis for Web Application Vulnerability Detection: Methodology and Case Study. - Paulo Jorge Costa Nunes; José Fonseca 002; Marco Vieira (IEEE Access, 2025)